T. Meuwissen, B. J. Hayes, and M. E. Goddard, Prediction of total genetic value using genome-wide dense marker maps, Genetics, vol.157, pp.1819-1829, 2001.

E. L. Heffner, J. L. Jannink, and M. E. Sorrells, Genomic selection accuracy using multifamily prediction models in a wheat breeding program, The Plant Genome, vol.4, pp.65-75, 2011.

G. R. Wiggans, P. M. Vanraden, and T. A. Cooper, The genomic evaluation system in the United States: past, present, future, J Dairy Sci, vol.94, pp.3202-3211, 2011.

L. R. Schaeffer, Strategy for applying genome-wide selection in dairy cattle, J Anim Breed Genet, vol.123, pp.218-223, 2006.

J. E. Pryce, M. E. Goddard, H. W. Raadsma, and B. J. Hayes, Deterministic models of breeding scheme designs that incorporate genomic selection, J Dairy Sci, vol.93, pp.5455-5466, 2010.

J. E. Pryce and H. D. Daetwyler, Designing dairy cattle breeding schemes under genomic selection-a review of international research, Anim Prod Sci, vol.52, issue.3, pp.107-114, 2011.

A. L. Van-eenennaam, J. Van-der-werf, and M. E. Goddard, The value of using DNA markers for beef bull selection in the seedstock sector, J Anim Sci, vol.89, pp.307-320, 2011.

P. Scheet and M. Stephens, A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase, Am J Hum Genet, vol.78, pp.629-644, 2006.

S. R. Browning and B. L. Browning, Haplotype phasing: existing methods and new developments, Nat Rev Genet, vol.16, pp.703-714, 2011.

T. Druet and M. Georges, A hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping, Genetics, vol.184, pp.789-798, 2010.

H. D. Daetwyler, G. R. Wiggans, B. J. Hayes, J. A. Woolliams, and M. E. Goddard, Imputation of missing genotypes from sparse to high density using long-range phasing, Genetics, vol.189, pp.317-327, 2011.

J. M. Hickey, B. P. Kinghorn, B. Tier, J. F. Wilson, and N. Dunstan, A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes, Genet Sel Evol, vol.43, p.12, 2011.

P. M. Vanraden, J. R. O'connell, G. R. Wiggans, and K. A. Weigel, Genomic evaluations with many more genotypes, Genet Sel Evol, vol.43, p.10, 2011.

T. Druet, C. Schrooten, and A. P. De-roos, Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle, J Dairy Sci, vol.93, pp.5443-5454, 2010.

K. A. Weigel, C. P. Van-tassell, O. Connell, J. R. Vanraden, P. M. Wiggans et al., Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms, J Dairy Sci, vol.93, pp.2229-2238, 2010.

R. Dassonneville, R. F. Brøndum, T. Druet, S. Fritz, and F. Guillaume, Effect of imputing markers from a low-density chip on the reliability of genomic breeding values in Holstein populations, J Dairy Sci, vol.94, pp.3679-3686, 2011.
URL : https://hal.archives-ouvertes.fr/hal-01000513

G. R. Wiggans, T. A. Cooper, P. M. Vanraden, K. M. Olson, and M. E. Tooker, Use of the Illumina Bovine3K BeadChip in dairy genomic evaluation, J Dairy Sci, vol.95, pp.1552-1558, 2012.

L. K. Matukumalli, C. T. Lawley, R. D. Schnabel, J. F. Taylor, and M. F. Allan, Development and characterization of a high density SNP genotyping assay for cattle, PLoS One, vol.4, issue.4, p.5350, 2009.

J. Johnston, G. Kistemaker, and P. G. Sullivan, Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds, Interbull Bulletin, vol.44, pp.528-532, 2009.

C. J. Edwards, C. Ginja, J. Kantanen, L. Pérez-pardal, and A. Tresset, Dual origins of dairy cattle farming-evidence from a comprehensive survey of European Y-chromosomal variation, PLoS ONE, vol.6, p.15922, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02646771

R. Dassonneville, S. Fritz, V. Ducrocq, and D. Boichard, Short Communication: Imputation performances of three low density marker panels in beef and dairy cattle, 2012.