T. Oinn, M. Greenwood, M. Addis, J. Ferris, K. Glover et al., Taverna: lessons in creating a workflow environment for the life sciences, Concurrency and Computation : Practice and Experience, pp.1067-1100, 2006.
DOI : 10.1002/cpe.993

S. Gundersen, M. Kalas, O. Abul, A. Frigessi, E. Hovig et al., Identifying elemental genomic track types and representing them uniformly, BMC Bioinformatics, vol.12, issue.1, p.494, 2011.
DOI : 10.1093/bioinformatics/btq164

URL : http://doi.org/10.1186/1471-2105-12-494

P. Rice, I. Longden, and A. Bleasby, EMBOSS: The European Molecular Biology Open Software Suite, Trends in Genetics, vol.16, issue.6, pp.276-277, 2000.
DOI : 10.1016/S0168-9525(00)02024-2

J. Goecks, A. Nekrutenko, J. Taylor, and T. G. Team, Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences, Genome Biology, vol.11, issue.8, p.86, 2010.
DOI : 10.1186/gb-2010-11-8-r86

H. Ménager, V. Gopalan, B. Néron, S. Larroudé, J. Maupetit et al., Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet, pp.11-22, 2010.
DOI : 10.1007/978-3-642-27392-6_2

P. N. Seibel, J. Krüger, S. Hartmeier, K. Schwarzer, K. Löwenthal et al., Xml schemas for common bioinformatic data types and their application in workflow systems, BMC Bioinformatics, vol.7, issue.1, p.490, 2006.
DOI : 10.1186/1471-2105-7-490

M. V. Han and C. M. Zmasek, phyloXML: XML for evolutionary biology and comparative genomics, BMC Bioinformatics, vol.10, issue.1, p.356, 2009.
DOI : 10.1186/1471-2105-10-356

M. Kalas, P. Puntervoll, A. Joseph, E. Bartaseviciute, A. Töpfer et al., BioXSD: the common data-exchange format for everyday bioinformatics web services, Bioinformatics, vol.26, issue.18, 2010.
DOI : 10.1093/bioinformatics/btq391

X. Li, Y. Fan, and F. Jiang, A Classification of Service Composition Mismatches to Support Service Mediation, Sixth International Conference on Grid and Cooperative Computing (GCC 2007), pp.315-321, 2007.
DOI : 10.1109/GCC.2007.1

P. V. Elizondo, V. Dwivedi, D. Garlan, B. R. Schmerl, and J. M. Fernandes, Resolving data mismatches in end-user compositions, IS-EUD, pp.120-136, 2013.

E. Stroulia and Y. Wang, STRUCTURAL AND SEMANTIC MATCHING FOR ASSESSING WEB-SERVICE SIMILARITY, International Journal of Cooperative Information Systems, vol.14, issue.04, pp.407-438, 2005.
DOI : 10.1142/S0218843005001213

M. Dibernardo, R. Pottinger, and M. Wilkinson, Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework, Journal of Biomedical Informatics, vol.41, issue.5, pp.837-847, 2008.
DOI : 10.1016/j.jbi.2008.02.005

N. Lebreton, C. Blanchet, D. B. Claro, J. Chabalier, A. Burgun et al., Verification of parameters semantic compatibility for semi-automatic web service composition, Proceedings of the 12th International Conference on Information Integration and Web-based Applications & Services, iiWAS '10
DOI : 10.1145/1967486.1967630

URL : https://hal.archives-ouvertes.fr/hal-00749032

J. C. Ison, M. Kalas, I. Jonassen, D. M. Bolser, M. Uludag et al., EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats, Bioinformatics, vol.29, issue.10, pp.1325-1332, 2013.
DOI : 10.1093/bioinformatics/btt113

H. Hosoya, J. Vouillon, and B. C. Pierce, Regular expression types for xml, ICFP, pp.11-22, 2000.
URL : https://hal.archives-ouvertes.fr/hal-00009271

J. D. Westbrook, N. Ito, H. Nakamura, K. Henrick, and H. M. Berman, PDBML: the representation of archival macromolecular structure data in XML, Bioinformatics, vol.21, issue.7, pp.988-992, 2005.
DOI : 10.1093/bioinformatics/bti082

R. D. Dowell, R. M. Jokerst, A. Day, S. R. Eddy, and L. Stein, The distributed annotation system, BMC Bioinformatics, vol.2, issue.1, p.7, 2001.
DOI : 10.1186/1471-2105-2-7

H. Mcwilliam, F. Valentin, M. Goujon, W. Li, M. Narayanasamy et al., Web services at the European Bioinformatics Institute-2009, Nucleic Acids Research, vol.37, issue.Web Server, pp.6-10, 2009.
DOI : 10.1093/nar/gkp302

M. D. Wilkinson and M. Links, BioMOBY: An open source biological web services proposal, Briefings in Bioinformatics, vol.3, issue.4, pp.331-341, 2002.
DOI : 10.1093/bib/3.4.331

E. Sirin, J. Hendler, and B. Parsia, Semi-automatic composition of web services using semantic descriptions, Web services : modeling, architecture and infrastructure workshop in ICEIS, 2003.

J. Ríos, T. J. Karlsson, and O. Trelles, Magallanes: a web services discovery and automatic workflow composition tool, BMC Bioinformatics, vol.10, issue.1, p.334, 2009.
DOI : 10.1186/1471-2105-10-334