Scalable molecular dynamics with NAMD, Journal of Computational Chemistry, vol.84, issue.16, pp.1781-1802, 2005. ,
DOI : 10.1002/jcc.20289
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2486339
GROMACS 4:?? Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation, Journal of Chemical Theory and Computation, vol.4, issue.3, pp.435-447, 2008. ,
DOI : 10.1021/ct700301q
Illuminating the Path: The Research and Development Agenda for Visual Analytics, 2005. ,
GROMACS 3.0: a package for molecular simulation and trajectory analysis, Journal of Molecular Modeling, vol.7, issue.8, pp.306-323, 2001. ,
DOI : 10.1007/s008940100045
Molecular Dynamics Simulations of the Bacterial Outer Membrane Protein FhuA: A Comparative Study of the Ferrichrome-Free and Bound States, Biophysical Journal, vol.85, issue.3, pp.1406-1426, 2003. ,
DOI : 10.1016/S0006-3495(03)74573-1
Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations, Proteins: Structure, Function, and Bioinformatics, vol.333, issue.4, pp.783-791, 2004. ,
DOI : 10.1002/prot.20257
??-Helical stabilization by side chain shielding of backbone hydrogen bonds, Proceedings of the National Academy of Sciences, vol.99, issue.5, pp.2782-2787, 2002. ,
DOI : 10.1073/pnas.042496899
Modularity for Large Virtual Reality Applications, Presence: Teleoperators and Virtual Environments, vol.7, issue.1, pp.142-162, 2010. ,
DOI : 10.1016/S0167-8191(02)00189-8
URL : https://hal.archives-ouvertes.fr/hal-00688474
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit, Bioinformatics, vol.29, issue.7, pp.845-854, 2013. ,
DOI : 10.1093/bioinformatics/btt055
VMD: Visual molecular dynamics, Journal of Molecular Graphics, vol.14, issue.1, pp.33-38, 1996. ,
DOI : 10.1016/0263-7855(96)00018-5
MDAnalysis: A toolkit for the analysis of molecular dynamics simulations, Journal of Computational Chemistry, vol.4, issue.Suppl. 2, pp.2319-2327, 2011. ,
DOI : 10.1002/jcc.21787
GPU-accelerated atom and dynamic bond visualization using hyperballs: A unified algorithm for balls, sticks, and hyperboloids, Journal of Computational Chemistry, vol.331, issue.Pt 5, pp.2924-2935, 2011. ,
DOI : 10.1002/jcc.21861
URL : https://hal.archives-ouvertes.fr/hal-00645162
The CAVE: audio visual experience automatic virtual environment, Communications of the ACM, vol.35, issue.6, pp.64-72, 1992. ,
DOI : 10.1145/129888.129892
Annual review of biophysics and biomolecular structure, pp.105-153, 2000. ,
Scientific Visualization: Dagstuhl '97 Proceedings, IEEE Computer, pp.95-104, 1997. ,
DOI : 10.1007/978-1-4471-6497-5
Alternative Mechanisms for the Interaction of the Cell-Penetrating Peptides Penetratin and the TAT Peptide with Lipid Bilayers, Biophysical Journal, vol.97, issue.1, pp.40-49, 2009. ,
DOI : 10.1016/j.bpj.2009.03.059
How do substrates enter and products exit the buried active site of cytochrome P450cam? 2. Steered molecular dynamics and adiabatic mapping of substrate pathways, Journal of Molecular Biology, vol.303, issue.5, pp.813-830, 2000. ,
DOI : 10.1006/jmbi.2000.4155
The MARTINI Force Field:?? Coarse Grained Model for Biomolecular Simulations, The Journal of Physical Chemistry B, vol.111, issue.27, pp.7812-7824, 2007. ,
DOI : 10.1021/jp071097f
Interactive Visual Analysis of Families of Function Graphs, IEEE Transactions on Visualization and Computer Graphics, vol.12, issue.6, pp.1373-1385, 2006. ,
DOI : 10.1109/TVCG.2006.99
Visualization and Computer Graphics, IEEE Transactions on, vol.18, pp.2621-2630, 2012. ,