GUBS, a behaviour-based language for design in synthetic biology

Abstract : In this article, we propose a domain specific language, GUBS (Genomic Unified Behaviour Specification), dedicated to the behavioural specification of synthetic biological devices, viewed as discrete open dynamical systems. GUBS is a rule-based declarative language. In contrast to a closed system, a program is always a partial description of the behaviour of the system. The semantics of the language accounts the existence of some hidden non-specified actions that possibly alter the behaviour of the programmed devices. The compilation framework follows a scheme similar to automated theorem proving, aiming at improving synthetic biological design safety.
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https://hal.archives-ouvertes.fr/hal-00871344
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Submitted on : Wednesday, October 9, 2013 - 2:55:32 PM
Last modification on : Friday, January 3, 2020 - 3:26:03 PM

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Adrien Basso-Blandin, Franck Delaplace. GUBS, a behaviour-based language for design in synthetic biology. Scientific Annals of Computer Science, Alexandru Ioan Cuza University Publishing House, 2013, 23 (1), pp.1--38. ⟨10.7561/SACS.2013.1.1⟩. ⟨hal-00871344⟩

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