B. Aarts and P. Nienhuis, Fish zonations and guilds as the basis for assessment of ecological [2pt] integrity of large rivers, Hydrobiologia, vol.500, issue.1-3, pp.157-178, 2003.
DOI : 10.1023/A:1024638726162

R. Abell, Conservation Biology for the Biodiversity Crisis: a Freshwater Follow-up, Conservation Biology, vol.11, issue.5, pp.1435-1437, 2002.
DOI : 10.1046/j.1523-1739.1999.98380.x

P. Abellan, D. Sanchez-fernandez, J. Velasco, and A. Millan, Conservation of Freshwater Biodiversity: a Comparison of Different Area Selection Methods, Biodiversity and Conservation, vol.10, issue.1, pp.3457-3474, 2005.
DOI : 10.1007/s10531-004-0550-1

J. Allan and A. Flecker, Biodiversity Conservation in Running Waters, BioScience, vol.43, issue.1, pp.32-43, 1993.
DOI : 10.2307/1312104

J. Aronson, A. Clewell, J. Blignaut, and S. Milton, Ecological restoration: A new frontier for nature conservation and economics, Journal for Nature Conservation, vol.14, issue.3-4, pp.135-139, 2006.
DOI : 10.1016/j.jnc.2006.05.005

A. Baisez and P. Laffaille, Un outil d'aide a ` la gestion de l'anguille : le tableau de bord anguille du bassin Loire. Bull Fr Pêche Piscicole, pp.378-379115, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00744106

A. Canard and F. Ysnel, Practical use of a single index to estimate the global range of rarity spider communities in western France, European Arachnology, pp.171-176, 2000.

J. Carwardine, W. Rochester, K. Richardson, K. Williams, R. Pressey et al., Conservation planning with irreplaceability: does the method matter?, Biodiversity and Conservation, vol.89, issue.1, pp.245-258, 2007.
DOI : 10.1007/s10531-006-9055-4

A. Chovanec, R. Hofer, and F. Schiemer, Fish as bioindicators, pp.639-675, 2003.

M. Collares-pereira and I. Cowx, The role of catchment scale environmental management in freshwater fish conservation, Fisheries Management and Ecology, vol.11, issue.3-4, pp.302-312, 2004.
DOI : 10.1016/S0006-3207(02)00132-5

G. Copp, P. Bianco, N. Bogutskaya, T. Eros, I. Falka et al., To be, or not to be, a non-native freshwater fish?, Journal of Applied Ichthyology, vol.25, issue.5, pp.242-262, 2005.
DOI : 10.1046/j.1365-2400.2000.007004315.x

F. Cuizhang, W. Jihua, C. Jiakuan, W. Qianhong, and L. Guangchun, Freshwater fish biodiversity in the Yangtze river basin of China: patterns, threats and conservation, Biodivers Conserv, vol.12, pp.1649-1685, 2003.

W. Darwall and J. Vié, Identifying important sites for conservation of freshwater biodiversity: extending the species-based approach, Fisheries Management and Ecology, vol.11, issue.5, pp.287-293, 2005.
DOI : 10.1046/j.1523-1739.1999.98380.x

A. Das, J. Krishnaswamy, K. Bawa, M. Kiran, S. V. Kumar et al., Prioritisation of conservation areas in the Western Ghats, India, Biological Conservation, vol.133, issue.1, pp.16-31, 2006.
DOI : 10.1016/j.biocon.2006.05.023

T. Dawson, P. Berry, and E. Kampa, Climate change impacts on freshwater wetland habitats, Journal for Nature Conservation, vol.11, issue.1, pp.25-30, 2003.
DOI : 10.1078/1617-1381-00031

D. Dudgeon, A. Arthington, M. Gessner, Z. Kawabata, D. Knowler et al., Freshwater biodiversity: importance, threats, status and conservation challenges, Biological Reviews, vol.11, issue.02, pp.163-182, 2006.
DOI : 10.1128/AEM.69.10.5875-5883.2003

S. Fattorini, A new method to identify important conservation areas applied to the butterflies of the Aegean Islands (Greece), Animal Conservation, vol.30, issue.1, pp.75-83, 2006.
DOI : 10.1046/j.1523-1739.1996.10010155.x

D. Galat and I. Zweimüller, an appropriate paradigm?, Journal of the North American Benthological Society, vol.20, issue.2, pp.266-279, 2001.
DOI : 10.2307/1468321

J. Gibbs, Wetland Loss and Biodiversity Conservation, Conservation Biology, vol.118, issue.1, pp.314-317, 2000.
DOI : 10.1046/j.1523-1739.2000.98608.x

N. Gotelli and R. Colwell, Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness, Ecology Letters, vol.590, issue.4, pp.379-391, 2001.
DOI : 10.1046/j.1461-0248.2001.00230.x

J. Guégan, S. Lek, and T. Oberdorff, Energy availability and habitat heterogeneity predict global riverine fish diversity, Nature, vol.391, issue.6665, pp.382-384, 1998.
DOI : 10.1038/34899

J. Heino, Concordance of species richness patterns among multiple freshwater taxa: a regional perspective, Biodiversity and Conservation, vol.11, issue.1, pp.137-147, 2002.
DOI : 10.1023/A:1014075901605

P. Hickley and S. Chare, Fisheries for non-native species in England and Wales: angling or the environment?, Fisheries Management and Ecology, vol.294, issue.2, pp.203-212, 2004.
DOI : 10.1046/j.1365-2400.2000.007004315.x

M. Huet, Profiles and Biology of Western European Streams as Related to Fish Management, Transactions of the American Fisheries Society, vol.88, issue.3, pp.155-163, 1959.
DOI : 10.1577/1548-8659(1959)88[155:PABOWE]2.0.CO;2

A. Ibarra, M. Gevrey, Y. Park, P. Lim, and L. Sovan, Modelling the factors that influence fish guilds composition using a back-propagation network: Assessment of metrics for indices of biotic integrity, Ecological Modelling, vol.160, issue.3, pp.281-290, 2003.
DOI : 10.1016/S0304-3800(02)00259-4

A. Ibarra, Y. Parks, S. Brosse, Y. Reyol, P. Lim et al., Nested patterns of spatial diversity revealed for fish assemblages in a west European river, Ecology of Freshwater Fish, vol.37, issue.3, pp.233-242, 2005.
DOI : 10.1007/s00027-002-8064-y
URL : https://hal.archives-ouvertes.fr/halsde-00341407

G. Kondolf, A. Boulton, O. Daniel, S. Poole, G. Rachel et al., Process-Based Ecological River Restoration: Visualizing Three-Dimensional Connectivity and Dynamic Vectors to Recover Lost Linkages, Ecology and Society, vol.11, issue.2, 2006.
DOI : 10.5751/ES-01747-110205

P. Laffaille, A. Acou, J. Guillouët, and A. Legault, Temporal changes in European eel, Anguilla anguilla, stocks in a small catchment after installation of fish passes, Fisheries Management and Ecology, vol.57, issue.2, pp.123-129, 2005.
DOI : 10.1111/j.1365-2400.2003.00353.x
URL : https://hal.archives-ouvertes.fr/hal-00793407

E. Lasne, B. Bergerot, S. Lek, and P. Laffaille, Fish zonation and indicator species for the evaluation of the ecological status of rivers: example of the Loire basin (France), River Research and Applications, vol.7, issue.423, pp.877-890, 2007.
DOI : 10.1002/rra.1030
URL : https://hal.archives-ouvertes.fr/hal-00262336

E. Lasne, S. Lek, and P. Laffaille, Patterns in fish assemblages in the Loire floodplain: The role of hydrological connectivity and implications for conservation, Biological Conservation, vol.139, issue.3-4, pp.258-268, 2007.
DOI : 10.1016/j.biocon.2007.07.002
URL : https://hal.archives-ouvertes.fr/hal-00262338

C. Lévêque, E. Balian, and K. Martens, An assessment of animal species diversity in continental waters, Hydrobiologia, vol.4, issue.2 2/7, pp.39-67, 2005.
DOI : 10.1007/s10750-004-5522-7

S. Lima-junior, I. Cardone, and R. Goitein, Fish assemblage structure and aquatic pollution in a Brazilian stream: some limitations of diversity indices and models for environmental impact studies, Ecology of Freshwater Fish, vol.24, issue.3, pp.284-290, 2006.
DOI : 10.2307/1936227

D. Lytle and N. Poff, Adaptation to natural flow regimes, Trends in Ecology & Evolution, vol.19, issue.2, pp.94-100, 2004.
DOI : 10.1016/j.tree.2003.10.002

D. Maes, D. Bauwens, D. Bruyn, L. Anselin, A. Vermeersch et al., Species richness coincidence: conservation strategies based on predictive modelling, Biodiversity and Conservation, vol.23, issue.6, pp.1345-1364, 2005.
DOI : 10.1007/s10531-004-9662-x

S. Manchester and J. Bullock, The impacts of non-native species on UK biodiversity and the effectiveness of control, Journal of Applied Ecology, vol.37, issue.5, pp.845-864, 2000.
DOI : 10.1046/j.1365-2664.2000.00538.x

C. Margules and R. Pressey, Systematic conservation planning, Nature, vol.405, issue.6783, pp.243-253, 2000.
DOI : 10.1038/35012251

N. Myers, R. Mittermeier, C. Mittermeier, D. Fonseca, G. Kent et al., Biodiversity hotspots for conservation priorities, Nature, vol.403, issue.6772, pp.853-858, 2000.
DOI : 10.1038/35002501

R. Noss, High-risk ecosystems as foci for considering biodiversity and ecological integrity in ecological risk assessments, Environmental Science & Policy, vol.3, issue.6, pp.321-332, 2000.
DOI : 10.1016/S1462-9011(00)00112-X

T. Oberdorff, E. Guilbert, and J. Lucchetta, Patterns of fish species richness in the Seine River basin, France, Hydrobiologia, vol.88, issue.3, pp.157-167, 1993.
DOI : 10.1007/BF00006595

T. Oberdorff, J. Guégan, and B. Hugueny, Global scale patterns of fish species richness in rivers, Ecography, vol.41, issue.4, pp.345-352, 1995.
DOI : 10.1016/0006-3207(93)90501-Q

T. Oberdorff, D. Pont, B. Hugueny, and D. Chessel, A probabilistic model characterizing fish assemblages of French rivers: a framework for environmental assessment, Freshwater Biology, vol.45, issue.3, pp.399-415, 2001.
DOI : 10.1046/j.1365-2427.1999.00431.x

T. Oberdorff, D. Pont, B. Hugueny, and J. Porcher, Development and validation of a fish-based index for the assessment of 'river health' in France, Freshwater Biology, vol.2, issue.9, pp.1720-1734, 2002.
DOI : 10.1046/j.1365-2427.1999.00431.x

S. Pawar, M. Koo, C. Kelley, M. Ahmed, S. Chaudhuri et al., Conservation assessment and prioritization of areas in Northeast India: Priorities for amphibians and reptiles, Biological Conservation, vol.136, issue.3, 2007.
DOI : 10.1016/j.biocon.2006.12.012

N. Poff, J. Allan, M. Bain, J. Karr, K. Prestegaard et al., The Natural Flow Regime, BioScience, vol.47, issue.11, pp.769-784, 1997.
DOI : 10.2307/1313099

C. Pringle, HYDROLOGIC CONNECTIVITY AND THE MANAGEMENT OF BIOLOGICAL RESERVES: A GLOBAL PERSPECTIVE, Ecological Applications, vol.11, issue.4, pp.981-998, 2001.
DOI : 10.1577/1548-8446(1994)019<0011:ROTERE>2.0.CO;2

M. Quist, F. Rahel, and W. Hubert, Hierarchical faunal filters: an approach to assessing effects of habitat and nonnative species on native fishes, Ecology of Freshwater Fish, vol.11, issue.1, pp.24-39, 2005.
DOI : 10.1577/1548-8675(1996)016<0340:AAPOSS>2.3.CO;2

A. Ricciardi and J. Rasmussen, Extinction Rates of North American Freshwater Fauna, Conservation Biology, vol.18, issue.9, pp.1220-1222, 1999.
DOI : 10.1046/j.1523-1739.1997.96236.x

D. Saunders, J. Meeuwig, and A. Vincent, Freshwater Protected Areas: Strategies for Conservation, Conservation Biology, vol.16, issue.1, pp.30-41, 2002.
DOI : 10.1023/A:1008989811637

G. Seegert, Considerations regarding development of index of biotic integrity metrics for large rivers, Environmental Science & Policy, vol.3, pp.99-106, 2000.
DOI : 10.1016/S1462-9011(00)00031-9

P. Sólymos and Z. Fehér, Conservation Prioritization Based on Distribution of Land Snails in Hungary, Conservation Biology, vol.118, issue.11, pp.1084-1094, 2005.
DOI : 10.1111/j.1523-1739.2005.00193.x

A. Szöllosi-nagy, P. Najilis, and G. Björklund, Assessing the world's freshwater resources, Nat Resour, vol.34, pp.8-18, 1998.

D. Tetzlaff, C. Soulsby, P. Bacon, A. Youngson, C. Gibbins et al., Connectivity between landscapes and riverscapes???a unifying theme in integrating hydrology and ecology in catchment science?, Hydrological Processes, vol.61, issue.10, pp.1385-1389, 2007.
DOI : 10.1002/hyp.6701

J. Turpie, Prioritizing South African estuaries for conservation: A practical example using waterbirds, Biological Conservation, vol.74, issue.3, pp.175-185, 1995.
DOI : 10.1016/0006-3207(95)00028-3

J. Verneaux, Fish and the quality of streams, An Sci Univ F Comté biol Anim, vol.4, issue.2, pp.33-41, 1981.

R. Welcomme, K. Winemiller, and I. Cowx, Fish environmental guilds as a tool for assessment of ecological condition of rivers, River Research and Applications, vol.129, issue.3, pp.377-396, 2006.
DOI : 10.1002/rra.914

J. Ward, K. Tockner, U. Uehlinger, and F. Malard, Understanding natural patterns and processes in river corridors as the basis for effective river restoration, Regulated Rivers: Research & Management, vol.27, issue.4-5, pp.311-323, 2001.
DOI : 10.1002/rrr.646

J. Ward, Riverine landscapes: Biodiversity patterns, disturbance regimes, and aquatic conservation, Biological Conservation, vol.83, issue.3, pp.269-278, 1998.
DOI : 10.1016/S0006-3207(97)00083-9

P. Williams, D. Gibbons, C. Margules, A. Rebelo, C. Humphries et al., A Comparison of Richness Hotspots, Rarity Hotspots, and Complementary Areas for Conserving Diversity of British Birds, Conservation Biology, vol.10, issue.1, pp.155-174, 1996.
DOI : 10.1046/j.1523-1739.1996.10010155.x

T. Young, Restoration ecology and conservation biology, Biological Conservation, vol.92, issue.1, pp.73-83, 2000.
DOI : 10.1016/S0006-3207(99)00057-9