O. Adelman and N. Enriquez, Random walks in random environment: What a single trajectory tells, Israel Journal of Mathematics, vol.8, issue.1, pp.205-220, 2004.
DOI : 10.1007/BF02771533

URL : https://hal.archives-ouvertes.fr/hal-00103060

A. Alemany, A. Mossa, I. Junier, and F. Ritort, Experimental free-energy measurements of??kinetic molecular states using fluctuation??theorems, Nature Physics, vol.137, issue.9, pp.688-694, 2012.
DOI : 10.1088/1742-5468/2009/02/P02060

P. Andreoletti and R. Diel, DNA Unzipping via Stopped Birth and Death Processes with Unknown Transition Probabilities, Applied Mathematics Research eXpress, 2012.
DOI : 10.1093/amrx/abs008

URL : https://hal.archives-ouvertes.fr/hal-00915251

V. Baldazzi, S. Bradde, S. Cocco, E. Marinari, and R. Monasson, Inferring DNA sequences from mechanical unzipping data: the large, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00142549

V. Baldazzi, S. Cocco, E. Marinari, and R. Monasson, Inference of DNA Sequences from Mechanical Unzipping: An Ideal-Case Study, Physical Review Letters, vol.96, issue.12, p.128102, 2006.
DOI : 10.1103/PhysRevLett.96.128102

C. V. Bizarro, A. Alemany, and F. Ritort, Non-specific binding of na+ and mg2+ to RNA determined by force spectroscopy methods. Nucleic Acids Re- search, 2012.

A. Chernov, Replication of a multicomponent chain by the lightning mechanism, Biofizika, vol.12, pp.297-301, 1967.

S. Cocco and R. Monasson, Reconstructing a random potential from its random walks, EPL (Europhysics Letters), vol.81, issue.2, 2008.
DOI : 10.1209/0295-5075/81/20002

URL : https://hal.archives-ouvertes.fr/hal-00142545

B. D. Hughes, Random walks and random environments, 1996.

J. M. Huguet, N. Forns, and F. Ritort, Statistical Properties of Metastable Intermediates in DNA Unzipping, Physical Review Letters, vol.103, issue.24, p.248106, 2009.
DOI : 10.1103/PhysRevLett.103.248106

H. Kesten, M. V. Kozlov, and F. Spitzer, A limit law for random walk in a random environment, Compositio Math, vol.30, pp.145-168, 1975.

E. S. Key, Limiting Distributions and Regeneration Times for Multitype Branching Processes with Immigration in a Random Environment, The Annals of Probability, vol.15, issue.1, pp.344-353, 1987.
DOI : 10.1214/aop/1176992273

S. J. Koch, A. Shundrovsky, B. C. Jantzen, and M. D. Wang, Probing Protein-DNA Interactions by Unzipping a Single DNA Double Helix, Biophysical Journal, vol.83, issue.2, pp.1098-1105, 2002.
DOI : 10.1016/S0006-3495(02)75233-8

J. R. Norris, Markov chains, of Cambridge Series in Statistical and Probabilistic Mathematics, 1998.
DOI : 10.1017/CBO9780511810633

M. Ribezzi-crivellari, M. Wagner, and F. Ritort, BAYESIAN APPROACH TO THE DETERMINATION OF THE KINETIC PARAMETERS OF DNA HAIRPINS UNDER TENSION, Journal of Nonlinear Mathematical Physics, vol.54, issue.sup2, pp.397-410, 2011.
DOI : 10.1142/9789812775511

A. Roitershtein, A note on multitype branching processes with immigration in a random environment, The Annals of Probability, vol.35, issue.4, pp.1573-1592, 2007.
DOI : 10.1214/009117906000001015

A. N. Shiryaev, Probability, Graduate Texts in Mathematics, vol.95, 1996.
DOI : 10.1007/978-1-4757-2539-1

URL : https://hal.archives-ouvertes.fr/hal-01477104

F. Solomon, Random Walks in a Random Environment, The Annals of Probability, vol.3, issue.1, pp.1-31, 1975.
DOI : 10.1214/aop/1176996444

A. W. Van-der-vaart, Asymptotic statistics, Volume 3 of Cambridge Series in Statistical and Probabilistic Mathematics, 1998.

A. Wald, Note on the Consistency of the Maximum Likelihood Estimate, The Annals of Mathematical Statistics, vol.20, issue.4, 1949.
DOI : 10.1214/aoms/1177729952

O. Zeitouni, Part II: Random Walks in Random Environment, Lectures on probability theory and statistics, pp.189-312, 2004.
DOI : 10.1007/978-3-540-39874-5_2