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ANGES: reconstructing ANcestral GEnomeS maps.

Bradley R Jones 1 Ashok Rajaraman 1 Eric Tannier 2, 3 Cedric Chauve 1 
3 BEAGLE - Artificial Evolution and Computational Biology
LIRIS - Laboratoire d'InfoRmatique en Image et Systèmes d'information, Inria Grenoble - Rhône-Alpes, LBBE - Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
Abstract : ANGES is a suite of Python programs that allows reconstructing ancestral genome maps from the comparison of the organization of extant-related genomes. ANGES can reconstruct ancestral genome maps for multichromosomal linear genomes and unichromosomal circular genomes. It implements methods inspired from techniques developed to compute physical maps of extant genomes. Examples of cereal, amniote, yeast or bacteria ancestral genomes are provided, computed with ANGES.
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Contributor : Eric Tannier Connect in order to contact the contributor
Submitted on : Tuesday, September 18, 2012 - 10:41:31 AM
Last modification on : Tuesday, October 25, 2022 - 4:24:35 PM

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Bradley R Jones, Ashok Rajaraman, Eric Tannier, Cedric Chauve. ANGES: reconstructing ANcestral GEnomeS maps.. Bioinformatics, 2012, 28 (18), pp.2388-2390. ⟨10.1093/bioinformatics/bts457⟩. ⟨hal-00733180⟩



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