N. Myers, C. Mittermeier, D. Fonseca, G. Kent, and J. , Biodiversity hotspots for conservation priorities, Nature, vol.403, issue.6772, pp.853-858, 2000.
DOI : 10.1038/35002501

C. Roberts, C. Mcclean, J. Veron, J. Hawkins, and G. Allen, Marine Biodiversity Hotspots and Conservation Priorities for Tropical Reefs, Science, vol.295, issue.5558, pp.1280-1284, 2002.
DOI : 10.1126/science.1067728

F. Chapin, E. Zavaleta, V. Eviner, R. Naylor, and P. Vitousek, Consequences of changing biodiversity, Nature, vol.405, issue.6783, pp.234-242, 2000.
DOI : 10.1038/35012241

K. Gaston, Global patterns in biodiversity, Nature, vol.405, issue.6783, pp.220-227, 2000.
DOI : 10.1038/35012228

K. Mccann, The diversity???stability debate, Nature, vol.405, issue.6783, pp.228-233, 2000.
DOI : 10.1038/35012234

J. Chase and M. Leibold, Spatial scale dictates the productivity???biodiversity relationship, Nature, vol.41, issue.6879, pp.427-430, 2002.
DOI : 10.1093/icb/21.4.877

M. Loreau, N. Mouquet, and A. Gonzales, Biodiversity as spatial insurance in heterogeneous landscapes, Proceedings of the National Academy of Sciences, vol.71, issue.23, pp.12765-12770, 2003.
DOI : 10.1046/j.1365-2656.2002.00625.x

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC240692

B. Worm, E. Barbier, N. Beaumont, E. Duffy, and C. Folke, Impacts of Biodiversity Loss on Ocean Ecosystem Services, Science, vol.314, issue.5800, pp.787-790, 2006.
DOI : 10.1126/science.1132294

D. Bellwood and T. Hughes, Regional-Scale Assembly Rules and Biodiversity of Coral Reefs, Science, vol.292, issue.5521, pp.1532-1534, 2001.
DOI : 10.1126/science.1058635

T. Hughes, D. Bellwood, and S. Connolly, Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs, Ecology Letters, vol.25, issue.6, pp.775-784, 2002.
DOI : 10.1146/annurev.es.25.110194.001321

C. Mora, P. Chittaro, P. Sale, J. Kritzer, and S. Ludsin, Patterns and processes in reef fish diversity, Nature, vol.101, issue.6926, pp.933-936, 2003.
DOI : 10.5479/si.00775630.412.1

K. Carpenter and V. Springer, The center of the center of marine shore fish biodiversity: the Philippine Islands, Environmental Biology of Fishes, vol.42, issue.4, pp.467-480, 2005.
DOI : 10.1007/s10641-004-3154-4

V. Springer and J. Williams, Widely distributed Pacific plate endemics and lowered sea-level, B Mar Sci, vol.47, pp.631-640, 1990.

F. Santini and R. Winterbottom, Historical biogeography of Indo-western Pacific coral reef biota: is the Indonesian region a centre of origin?, Journal of Biogeography, vol.72, issue.2, pp.189-205, 2002.
DOI : 10.1146/annurev.ecolsys.19.1.513

P. Barber and D. Bellwood, Biodiversity hotspots: evolutionary origins of biodiversity in wrasses (Halichoeres: Labridae) in the Indo-Pacific and new world tropics, Molecular Phylogenetics and Evolution, vol.35, issue.1, pp.235-253, 2005.
DOI : 10.1016/j.ympev.2004.10.004

C. Read, D. Bellwood, and L. Van-herwerden, Ancient origins of Indo-Pacific coral reef fish biodiversity: A case study of the leopard wrasses (Labridae: Macropharyngodon), Molecular Phylogenetics and Evolution, vol.38, issue.3, pp.808-819, 2006.
DOI : 10.1016/j.ympev.2005.08.001

D. Bellwood and C. Meyer, Searching for heat in a marine biodiversity hotspot, Journal of Biogeography, vol.33, issue.4, pp.569-576, 2009.
DOI : 10.1111/j.0014-3820.2004.tb01600.x

D. Tilman, Causes, consequences and ethics of biodiversity, Nature, vol.405, issue.6783, pp.208-209, 2000.
DOI : 10.1038/35012217

C. Margules and R. Pressey, Systematic conservation planning, Nature, vol.405, issue.6783, pp.243-253, 2000.
DOI : 10.1038/35012251

R. Grenyer, C. Orme, S. Jackson, G. Thomas, and R. Davies, Global distribution and conservation of rare and threatened vertebrates, Nature, vol.313, issue.7115, pp.93-96, 2006.
DOI : 10.1126/science.1127609

T. Dawson, S. Jackson, J. House, I. Prentice, and G. Mace, Beyond Predictions: Biodiversity Conservation in a Changing Climate, Science, vol.106, issue.24, pp.53-58, 2011.
DOI : 10.1073/pnas.0902327106

J. Briggs, Extinction and replacement in the Indo-West Pacific Ocean, Journal of Biogeography, vol.19, issue.4, pp.777-783, 1999.
DOI : 10.1007/s003380050241

M. Alfaro, F. Santini, and C. Brock, DO REEFS DRIVE DIVERSIFICATION IN MARINE TELEOSTS? EVIDENCE FROM THE PUFFERFISH AND THEIR ALLIES (ORDER TETRAODONTIFORMES), Evolution, vol.13, issue.9, pp.2104-2126, 2007.
DOI : 10.1126/science.1058288

M. Reaka, P. Rodgers, and A. Kudla, Patterns of biodiversity and endemism on Indo-West Pacific coral reefs, Proceedings of the National Academy of Sciences, vol.15, issue.14, pp.11474-11481, 2008.
DOI : 10.1016/j.cub.2005.06.061

S. Mccafferty, E. Bermingham, B. Quenouille, S. Planes, and G. Hoelzer, Historical biogeography and molecular systematics of the Indo-Pacific genus Dascyllus (Teleostei: Pomacentridae), Molecular Ecology, vol.52, issue.8, pp.1377-1392, 2002.
DOI : 10.1016/0169-5347(88)90176-0

S. Lourie and A. Vincent, A marine fish follows Wallace's Line: the phylogeography of the three-spot seahorse (Hippocampus trimaculatus, Syngnathidae, Teleostei) in Southeast Asia, Journal of Biogeography, vol.2, issue.1, pp.1975-1985, 2004.
DOI : 10.1530/jrf.0.0020195

V. Messmer, L. Van-herwerden, P. Munday, and G. Jones, Phylogeography of colour polymorphism in the coral reef fish Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef, Coral Reefs, vol.18, issue.4, pp.392-402, 2005.
DOI : 10.1093/oxfordjournals.molbev.a003788

K. Kuriiwa, N. Hanzawa, T. Yoshino, S. Kimura, and M. Nishida, Phylogenetic relationships and natural hybridization in rabbitfishes (Teleostei: Siganidae) inferred from mitochondrial and nuclear DNA analyses, Molecular Phylogenetics and Evolution, vol.45, issue.1, pp.69-80, 2007.
DOI : 10.1016/j.ympev.2007.04.018

J. Drew, G. Allen, L. Kaufman, and P. Barber, Endemism and Regional Color and Genetic Differences in Five Putatively Cosmopolitan Reef Fishes, Conservation Biology, vol.314, issue.4, pp.965-975, 2008.
DOI : 10.1126/science.1132294

J. Drew and P. Barber, Sequential cladogenesis of the reef fish Pomacentrus moluccensis (Pomacentridae) supports the peripheral origin of marine biodiversity in the Indo-Australian archipelago, Molecular Phylogenetics and Evolution, vol.53, issue.1, pp.335-339, 2009.
DOI : 10.1016/j.ympev.2009.04.014

D. Steinke, T. Zemlak, and P. Hebert, Barcoding Nemo: DNA-Based Identifications for the Ornamental Fish Trade, PLoS ONE, vol.4, issue.7, p.6300, 2009.
DOI : 10.1371/journal.pone.0006300.s002

URL : http://doi.org/10.1371/journal.pone.0006300

M. Leray, R. Beldade, S. Holbrook, R. Schmitt, and S. Planes, SPECIES COMPLEX, Evolution, vol.40, pp.1218-1230, 2010.
DOI : 10.1111/j.0014-3820.2001.tb00760.x

K. Winters, L. Van-herwerden, J. Choat, and D. Robertson, Phylogeography of the Indo-Pacific parrotfish Scarus psittacus: isolation generates distinctive peripheral populations in two oceans, Marine Biology, vol.96, issue.8, pp.1679-1691, 2010.
DOI : 10.1098/2004.3005

P. Hebert, E. Penton, J. Burns, D. Janzen, and W. Hallwachs, Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator, Proceedings of the National Academy of Sciences, vol.7, issue.2, pp.14812-14817, 2004.
DOI : 10.1006/mpev.1996.0388

A. Smith, D. Wood, D. Janzen, W. Hallwachs, and P. Hebert, DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists, Proceedings of the National Academy of Sciences, vol.135, issue.4, pp.4967-4972, 2007.
DOI : 10.1007/s00442-003-1235-2

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1821123

A. Smith, J. Rodriguez, J. Whitfield, A. Deans, and D. Janzen, Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections, Proceedings of the National Academy of Sciences, vol.45, issue.2, pp.12359-12364, 2008.
DOI : 10.1016/j.ympev.2007.06.021

R. Ward, T. Zemlak, B. Innes, P. Last, and P. Hebert, DNA barcoding Australia's fish species, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.11, issue.6897, pp.1847-1857, 2005.
DOI : 10.1093/molbev/msg133

N. Hubert, R. Hanner, E. Holm, N. Mandrak, and E. Taylor, Identifying Canadian Freshwater Fishes through DNA Barcodes, PLoS ONE, vol.273, issue.6, p.2490, 2008.
DOI : 10.1371/journal.pone.0002490.s002

URL : http://doi.org/10.1371/journal.pone.0002490

R. Ward, F. Costa, B. Holmes, and D. Steinke, DNA barcoding of shared fish species from the North Atlantic and Australasia: minimal divergence for most taxa, but Zeus faber and Lepidopus caudatus each probably constitute two species, Aquatic Biology, vol.3, pp.71-78, 2008.
DOI : 10.3354/ab00068

W. Eschmeyer, Catalog of Fishes electronic version Available, 2011.

R. Froese and P. D. , Fishbase. Worldwide web electronic publication, 2011.
DOI : 10.1017/cbo9780511920943.006

N. Hubert, E. Paradis, H. Bruggemann, and S. Planes, Community assembly and diversification in Indo-Pacific coral reef fishes, Ecology and Evolution, vol.19, issue.3, pp.229-277, 2011.
DOI : 10.1016/j.tree.2004.09.011

URL : https://hal.archives-ouvertes.fr/hal-00722758

D. Schindel and S. Miller, DNA barcoding a useful tool for taxonomists, Nature, vol.434, issue.7038, p.17, 2005.
DOI : 10.1038/435017b

D. Funk and K. Omland, Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA, Annual Review of Ecology, Evolution, and Systematics, vol.34, issue.1, pp.397-423, 2003.
DOI : 10.1146/annurev.ecolsys.34.011802.132421

L. Rocha and B. Bowen, Speciation in coral-reef fishes, Journal of Fish Biology, vol.66, issue.5, pp.1101-1121, 2008.
DOI : 10.1016/j.ympev.2006.02.012

H. Voris, Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations, Journal of Biogeography, vol.313, issue.5, pp.1153-1167, 2000.
DOI : 10.1016/0277-3791(87)90003-5

K. Carpenter, P. Barber, E. Crandal, C. Blan-lagman, and . Ambariyanto, Comparative Phylogeography of the Coral Triangle and Implications for Marine Management, Journal of Marine Biology, vol.19, issue.5, 2011.
DOI : 10.1073/pnas.0808007106

W. Mcmillan and S. Palumbi, Concordant Evolutionary Patterns among Indo-West Pacific Butterflyfishes, Proceedings of the Royal Society B: Biological Sciences, vol.260, issue.1358, pp.229-236, 1995.
DOI : 10.1098/rspb.1995.0085

J. Randall, Reef and shore fishes of the South Pacific: New Caledonia to Tahiti and the Pitcairn Islands, 2005.

C. Baldwin, J. Mounts, D. Smith, and L. Weigt, Genetic Identification and color descriptions of early life-history stages of Belizean Phaeoptyx and Astrapogon (Teleostei: Apogonidae) with comments on identification of adult Phaeoptyx, Zootaxa, pp.1-22, 2008.