J. Abello, F. Van-ham, and N. Krishnan, ASK-GraphView: A Large Scale Graph Visualization System, IEEE Transactions on Visualization and Computer Graphics, vol.12, issue.5, pp.669-676, 2006.
DOI : 10.1109/TVCG.2006.120

E. Adar, GUESS, Proceedings of the SIGCHI conference on Human Factors in computing systems , CHI '06, pp.791-800, 2006.
DOI : 10.1145/1124772.1124889

D. Archambault, Structural differences between two graphs through hierarchies, Proc. of Graphics Interface, pp.87-94, 2009.
URL : https://hal.archives-ouvertes.fr/inria-00413854

D. Archambault, T. Munzner, and D. Auber, Smashing Peacocks Further: Drawing Quasi-Trees from Biconnected Components, Proc. Vis, pp.813-820, 2006.
DOI : 10.1109/TVCG.2006.177

URL : https://hal.archives-ouvertes.fr/hal-00306602

D. Archambault, T. Munzner, and D. Auber, Grouse: Feature-based, steerable graph hierarchy exploration, Proc. of Eurographics/IEEE VGTC Symp. on Visualization (EuroVis '07), pp.67-74, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00306603

D. Archambault, T. Munzner, and D. Auber, TopoLayout: Multilevel Graph Layout by Topological Features, IEEE Transactions on Visualization and Computer Graphics, vol.13, issue.2, pp.305-317, 2007.
DOI : 10.1109/TVCG.2007.46

URL : https://hal.archives-ouvertes.fr/hal-00306601

D. Archambault, T. Munzner, and D. Auber, GrouseFlocks: Steerable Exploration of Graph Hierarchy Space, IEEE Transactions on Visualization and Computer Graphics, vol.14, issue.4, pp.900-913, 2008.
DOI : 10.1109/TVCG.2008.34

URL : https://hal.archives-ouvertes.fr/inria-00338627

D. Archambault, T. Munzner, and D. Auber, TugGraph: Path-preserving hierarchies for browsing proximity and paths in graphs, 2009 IEEE Pacific Visualization Symposium, pp.113-121, 2009.
DOI : 10.1109/PACIFICVIS.2009.4906845

URL : https://hal.archives-ouvertes.fr/inria-00413858

D. Auber, Outils de visualisation de larges structures de donnes, 2002.

D. Auber, Using Strahler numbers for real time visual exploration of huge graphs, Using Strahler numbers for real time visual exploration of huge graphs International Conference on Computer Vision and Graphics, pp.56-69, 2002.
URL : https://hal.archives-ouvertes.fr/hal-00307631

D. Auber, Tulip ??? A Huge Graph Visualization Framework, Graph Drawing Software, Mathematics and Visualization, pp.105-126, 2003.
DOI : 10.1007/978-3-642-18638-7_5

D. Auber, Y. Chiricota, F. Jourdan, and G. Melanon, Multiscale navigation of small world networks, IEEE Symposium on Information Visualisation, pp.75-81, 2003.

D. Auber, M. Delest, J. Domenger, and S. Dulucq, Efficient drawing of RNA secondary structure, Journal of Graph Algorithms and Applications, vol.10, issue.2, pp.329-351, 2006.
DOI : 10.7155/jgaa.00131

URL : https://hal.archives-ouvertes.fr/hal-00307625

D. Auber, M. Delest, J. Domenger, P. Ferraro, and R. Strandh, EVAT: Environment for Visualization and Analysis of Trees, EVAT: Environment for Visualization and Analysis of Trees Proceedings of the IEEE Symposium on Information Visualization, pp.124-125, 2003.
URL : https://hal.archives-ouvertes.fr/hal-00308270

D. Auber and F. Jourdan, Interactive Refinement of Multi-scale Network Clusterings, Ninth International Conference on Information Visualisation (IV'05), pp.703-709, 2005.
DOI : 10.1109/IV.2005.65

URL : https://hal.archives-ouvertes.fr/hal-00307633

D. Auber and P. Mary, Mise en place dun mécanisme de plugins en c++, Programmation sous Linux, vol.1, issue.5, pp.74-79, 2006.

D. Auber, N. Novelli, and G. Melançon, Visually Mining the Datacube using a Pixel-Oriented Technique, 2007 11th International Conference Information Visualization (IV '07), pp.3-10, 2007.
DOI : 10.1109/IV.2007.140

URL : https://hal.archives-ouvertes.fr/lirmm-00153855

V. Batagelj and A. Mrvar, Pajek -analysis and visualization of large networks, Graph Drawing Software, pp.77-103, 2003.

K. Beck and C. Andres, Extreme Programming Explained : Embrace Change, 2004.

R. Boulet, B. Jouve, F. Rossi, and N. Villa, Batch kernel som and related laplacian methods for social network analysis. Neuro- Computing Special Issue on Progress in Modeling, Theory, and Application of Computational Intelligenc -15th European Symposium on Artificial Neural Networks, p.12571273, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00202339

R. Bourqui and D. Auber, Large Quasi-Tree Drawing: A Neighborhood Based Approach, 2009 13th International Conference Information Visualisation, 2009.
DOI : 10.1109/IV.2009.40

URL : https://hal.archives-ouvertes.fr/hal-00406435

]. R. Bourqui, V. Lacroix, L. Cottret, D. Auber, P. Mary et al., Metabolic network visualization eliminating node redundance and preserving metabolic pathways, BMC Systems Biology, vol.1, issue.1, 2007.
DOI : 10.1186/1752-0509-1-29

URL : https://hal.archives-ouvertes.fr/hal-00434765

M. Chimani, C. Gutwenger, M. Jünger, K. Klein, P. Mutzel et al., The open graph drawing framework, Posters of the 15th International Symp. on Graph Drawing (GD'07), p.3, 2007.

Y. Chiricota, F. Jourdan, and G. Melanon, Software components capture using graph clustering, MHS2003. Proceedings of 2003 International Symposium on Micromechatronics and Human Science (IEEE Cat. No.03TH8717), pp.217-226, 2003.
DOI : 10.1109/WPC.2003.1199205

URL : https://hal.archives-ouvertes.fr/lirmm-00269464

J. Ellson, E. R. Gansner, E. Koutsofios, S. North, and G. Woodhull, Graphviz??? Open Source Graph Drawing Tools, The 9th International Symp. on Graph Drawing (GD'01), volume 2265 of LNCS, pp.483-484, 2002.
DOI : 10.1007/3-540-45848-4_57

N. Elmqvist and J. Fekete, Hierarchical Aggregation for Information Visualization: Overview, Techniques, and Design Guidelines, IEEE Transactions on Visualization and Computer Graphics, vol.16, issue.3, pp.439-454, 2010.
DOI : 10.1109/TVCG.2009.84

URL : https://hal.archives-ouvertes.fr/hal-00696751

J. Fekete, The InfoVis Toolkit, IEEE Symposium on Information Visualization, pp.167-174, 2004.
DOI : 10.1109/INFVIS.2004.64

URL : https://hal.archives-ouvertes.fr/hal-00877111

M. Fowler, K. Beck, J. Brant, W. Opdyke, and D. Roberts, Refactoring: Improving the Design of Existing Code, 1999.
DOI : 10.1007/3-540-45672-4_31

E. Gamma, R. Helm, R. Johnson, and J. M. Vlissides, Design Patterns: Elements of Reusable Object-Oriented Software, 1994.

J. Heer, S. K. Card, and J. A. Landay, prefuse, Proceedings of the SIGCHI conference on Human factors in computing systems , CHI '05, pp.421-430, 2005.
DOI : 10.1145/1054972.1055031

F. Iragne, M. Nikolski, B. Mathieu, D. Auber, and D. J. Sherman, ProViz: protein interaction visualization and exploration, Bioinformatics, vol.21, issue.2, pp.272-274, 2005.
DOI : 10.1093/bioinformatics/bth494

URL : https://hal.archives-ouvertes.fr/inria-00202436

T. Kohonen, Self-organized formation of topologically correct feature maps, Biological Cybernetics, vol.13, issue.1, pp.59-69, 1982.
DOI : 10.1007/BF00337288

R. C. Martin, Agile Software Development, Principles, Patterns, and Practices, 2002.

K. Mehlhorn and S. Näher, LEDA: a platform for combinatorial and geometric computing, Communications of the ACM, vol.38, issue.1, pp.96-102, 1995.
DOI : 10.1145/204865.204889

T. Moscovich, F. Chevalier, N. Henry, E. Pietriga, and J. D. Fekete, Topology-aware navigation in large networks, Proceedings of the 27th international conference on Human factors in computing systems, CHI 09, pp.2319-2328, 2009.
DOI : 10.1145/1518701.1519056

URL : https://hal.archives-ouvertes.fr/inria-00373679

T. Munzner, A Nested Model for Visualization Design and Validation, IEEE Transactions on Visualization and Computer Graphics, vol.15, issue.6, pp.921-928, 2009.
DOI : 10.1109/TVCG.2009.111

T. Munzner, F. Guimbretiére, S. Tasiran, L. Zhang, and Y. Zhou, TreeJuxtaposer, Proc. SIGGRAPH 2003, pp.453-462, 2003.
DOI : 10.1145/882262.882291

P. Mutzel, C. Gutwenger, R. Brockenauer, S. Fialko, G. Klau et al., A Library of Algorithms for Graph Drawing, The 6th International Symp. on Graph Drawing (GD'98), volume 1547 of LNCS, pp.456-457, 1998.
DOI : 10.1007/3-540-37623-2_44

U. A. Perego, The power of dna: Discovering lost and hidden relationships. how dna analysis techniques are assisting in the great search for our ancestors, World Library and Information Congress: 71th IFLA General Conference and Council, pp.1-19, 2005.

M. Raitner, HGV: A Library for Hierarchies, Graphs, and Views, 10th International Symposium on Graph Drawing, pp.236-243, 2002.
DOI : 10.1007/3-540-36151-0_22

C. Rozenblat, G. Melanon, M. Amiel, D. Auber, C. Discazeaux et al., Worldwide multi-level networks of cities emerging from air traffic, International Geographical Union IGU 2006 Cities of Tomorrow, 2000.

W. Schroeder, K. Martin, and B. Lorensen, The Visualization Toolkit An Object-Oriented Approach To 3D Graphics, 2006.

P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang et al., Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks, Genome Research, vol.13, issue.11, pp.132498-504, 2003.
DOI : 10.1101/gr.1239303

B. Shneiderman, The eyes have it: A task by data type taxonomy for information visualizations, VL'96: Proc. of the 1996 IEEE Symp. on Visual Languages, pp.336-344, 1996.

C. Tominskia, J. Abello, and H. Schumann, CGV???An interactive graph visualization system, Computers & Graphics, vol.33, issue.6, pp.660-678, 2009.
DOI : 10.1016/j.cag.2009.06.002

B. Wylie and J. Baumes, A unified toolkit for information and scientific visualization Visualization and Data Analysis, 2009.