EST-SSRs as a resource for population genetic analyses, Heredity, vol.99, issue.2, pp.125-132, 2007. ,
Genic microsatellite markers in plants: features and applications, Trends Biotechnol, vol.23, issue.1, pp.48-55, 2005. ,
Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek), BMC Plant Biology, vol.9, issue.1, pp.137-149, 2009. ,
Selective mapping: A strategy for optimizing the construction of high-density linkage maps, Genetics, vol.155, issue.1, pp.407-420, 2000. ,
Mapping with a few plants: Using selective mapping for microsatellite saturation of the Prunus reference map, Genetics, vol.171, issue.3, pp.1305-1309, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02678714
Bin mapping of genomic and EST-derived SSRs in melon, Cucumis melo L.). Theoretical and Applied Genetics, vol.118, issue.1, pp.139-150, 2008. ,
The development of a bin mapping population and the selective mapping of 103 markers in the diploid Fragaria reference map, Genome, vol.51, issue.2, pp.120-127, 2008. ,
Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences, Tree Genetics and Genomes, vol.5, issue.1, pp.93-107, 2009. ,
BAC-end sequence-based SNPs and Bin mapping for rapid integration of physical and genetic maps in apple, Genomics, vol.93, issue.3, pp.282-288, 2009. ,
Latitudinal and altitudinal variation of bud burst in western populations of sessile oak (Quercus petraea (Matt) Liebl), Annales Sciences Forestières, vol.53, pp.775-782, 1996. ,
URL : https://hal.archives-ouvertes.fr/hal-00883094
Geographical variation in phenology of Quercus petraea (Matt.) Liebl and Quercus robur L. oak grown in a greenhouse, Scandinavian Journal of Forest Research, vol.23, issue.2, pp.179-188, 2008. ,
Distribution of genomic regions differentiating oak species assessed by QTL detection, Heredity, vol.92, issue.1, pp.20-30, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-02678139
Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L. Theoretical and Applied Genetics, vol.109, pp.1648-1659, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-02681266
Quantitative trait loci controlling water use efficiency and related traits in Quercus robur L, Tree Genet Genomes, vol.4, issue.2, pp.263-278, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-01032066
Quantitative trait loci of tolerance to waterlogging in a European oak (Quercus robur L.): physiological relevance and temporal effect patterns, Plant, Cell and Environment, vol.30, issue.4, pp.422-434, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-02665582
Contrasting correlations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks, Heredity, vol.104, pp.438-448, 2010. ,
Transcriptome analysis of bud burst in sessile oak (Quercus petraea), New Phytol, vol.170, issue.4, pp.723-738, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02666078
The diversity of 13C isotope discrimination in a Quercus robur full-sib family is associated with differences in intrinsic water use efficiency, transpiration efficiency, and stomatal conductance, Journal of Experimental Botany, vol.60, issue.8, pp.2419-2431, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00489874
A genetic linkage map of Quercus robur L. (pedunculate oak) based on RAPD, SCAR, microsatellite, minisatellite, isozyme and 55 rDNA markers, Theoretical and Applied Genetics, vol.97, issue.7, pp.1090-1103, 1998. ,
URL : https://hal.archives-ouvertes.fr/hal-02694736
Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs). Theoretical and Applied Genetics, vol.108, pp.558-566, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-02679023
F: Fagaceae trees, Genome Mapping & Molecular Breeding. Forest Trees. Edited by: Kole CR, pp.161-187, 2007. ,
A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium, Genetics, vol.176, issue.1, p.527, 2007. ,
mreps: efficient and flexible detection of tandem repeats in DNA, Nucleic Acids Res, vol.31, issue.13, pp.3672-3678, 2003. ,
URL : https://hal.archives-ouvertes.fr/inria-00099597
ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences, Proc Int Conf Intell Syst Mol Biol, pp.138-186, 1999. ,
Development of ten microsatellite markers for Quercus mongolica var. crispula by database mining, Conserv Genet, vol.9, issue.4, pp.1083-1085, 2008. ,
Generation of Expressed Sequence Tags and development of microsatellite markers for Castanopsis sieboldii var. sieboldii (Fagaceae), Annals of Forest Science, vol.66, issue.5, pp.509-509, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00883475
Population differenciation of sessile oak at the altitudinal front of migration in the French Pyrenees, Mol Ecol ,
High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L) Skeels] endemic to Morocco, Molecular Ecology, vol.5, pp.547-555, 1996. ,
MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations, Genomics, vol.1987, issue.2, pp.174-181 ,
JoinMap® 4. Software for the calculation of genetic linkage maps in experimental populations, 2006. ,
A high density genetic map of maritime pine based on AFLPs, Annals of Forest Science, vol.59, pp.627-636, 2002. ,
Comparison and integration of four barley genetic maps, Genome, vol.39, pp.379-394, 1996. ,
Restriction fragment length polymorphism maps and the concept of graphical genotypes, Theoretical and Applied Genetics, vol.77, issue.1, pp.95-101, 1989. ,
Detecting microsatellites within genomes: significant variation among algorithms, BMC Bioinformatics, vol.8, issue.1, pp.125-143, 2007. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00193269
Unigene derived microsatellite markers for the cereal genomes. Theoretical and applied genetics, vol.112, pp.808-817, 2006. ,
Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley, BMC Genomics, vol.6, issue.1, pp.23-34, 2005. ,
Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species, Genome, vol.48, issue.6, pp.985-998, 2005. ,
Microsatellite primer resource for Populus developed from the mapped sequence scaffolds of the Nisqually-1 genome, New Phytol, vol.181, issue.2, pp.498-503, 2009. ,
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray), Science, vol.313, issue.5793, pp.1596-1604, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02669155
Plant simple sequence repeats: distribution, variation, and effects on gene expression, Genome, vol.51, issue.2, pp.79-90, 2008. ,
Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes, Nature Genetics, vol.30, issue.2, pp.194-200, 2002. ,
Slippage synthesis of simple sequence DNA, Nucleic Acids Res, vol.20, issue.2, pp.211-215, 1992. ,
, BMC Genomics, vol.11, 2010.
Selection against frameshift mutations limits microsatellite expansion in coding DNA, Genome Research, vol.10, issue.1, pp.72-80, 2000. ,
Biased distribution of microsatellite motifs in the rice genome, Molecular Genetics and Genomics, vol.277, issue.5, pp.469-480, 2007. ,
A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription, FEBS Letters, vol.554, issue.1, pp.17-22, 2003. ,
Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding, BMC Genomics, vol.9, issue.1, pp.57-75, 2008. ,
Direct fluorescent primers are superior to M13-tailed primers for Pinus taeda microsatellites, Biotechniques, vol.32, issue.1, pp.46-52, 2002. ,
Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias, Genome Research, vol.18, issue.6, pp.881-887, 2008. ,
PCR-amplified microsatellites as markers in plant genetics, The Plant Journal, vol.1993, issue.1, pp.175-182 ,
Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential, Genome Research, vol.11, issue.8, pp.1441-1452, 2001. ,
Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat, Plant Molecular Biology, vol.48, issue.5, pp.501-510, 2002. ,
High-resolution radiation hydrid map of wheat chromosome 1D, Genetics, vol.173, issue.2, pp.1089-1999, 2006. ,
Ratnasiri A: A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat, Genetics, vol.168, issue.2, pp.701-712, 2004. ,
A set of EST-SNPs for map saturation and cultivar identification in melon, BMC Plant Biology, vol.9, issue.1, pp.90-99, 2009. ,
A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base, Genome Research, vol.9, issue.11, pp.1143-1155, 1999. ,
, , 1999.
d2_cluster: a validated method for clustering EST and full-length cDNA sequences, Genome Research, vol.9, issue.11, pp.1135-1142, 1999. ,
, Green P: Documentation for phrap, 1996.
CRAWview: for viewing splicing variation, gene families, and polymorphism in clusters of ESTs and full-length sequences, Bioinformatics, vol.15, issue.5, pp.376-381, 1999. ,
Computational and Experimental Analysis of Microsatellites in Rice (Oryza sativa L.): Frequency, Length Variation, Transposon Associations, and Genetic Marker Potential, Genome Research, vol.11, pp.1441-52, 2001. ,
FrameDP: sensitive peptide detection on noisy matured sequences, Bioinformatics, vol.25, issue.5, pp.670-671, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02665259
, Primer 3.0
An economic method for the fluorescent labeling of PCR fragments, Nature Biotechnology, vol.18, issue.2, pp.233-234, 2000. ,
DNA polymorphisms amplified by arbitrary primers are useful as geneticmarkers, Nucleic Acids Res, vol.18, issue.22, pp.6531-6535, 1990. ,
Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers, Genetics, vol.137, issue.4, pp.1121-1137, 1994. ,
,
, M: Molecular Evolutionary Genetics, 1987.
FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3), Updated from Goudet, 1995. ,
A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study, BMC Genomics, vol.11, p.570, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00645935