A. Masalma, M. Raoult, D. Roux, and V. , Staphylococcus massiliensis sp. nov., isolated from a human brain abscess, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.60, issue.5, pp.1066-1072, 2010.
DOI : 10.1099/ijs.0.006486-0

T. Bannerman and W. Kloos, Staphylococcus capitis subsp. ureolyticus subsp. nov. from Human Skin, International Journal of Systematic Bacteriology, vol.41, issue.1, pp.144-147, 1991.
DOI : 10.1099/00207713-41-1-144

A. Broek and J. Fitzgerald, Population genetic structure of the 427 Staphylococcus intermedius group: insights into agr diversification and the 428 emergence of methicillin-resistant strains, J Bacteriol, vol.189, pp.8685-8692, 2007.

K. Becker, D. Harmsen, A. Mellmann, C. Meier, P. Schumann et al., Rapid 468 identification by specific PCR of coagulase-negative staphylococcal species 469 important in hospital infection, J Med Microbiol, vol.46, issue.470, pp.45-53, 1997.

V. Hajek, H. Meugnier, M. Bes, Y. Brun, F. Fiedler et al., Staphylococcus saprophyticus subsp. bovis subsp. nov., Isolated from Bovine Nostrils, International Journal of Systematic Bacteriology, vol.46, issue.3, pp.792-796, 1996.
DOI : 10.1099/00207713-46-3-792

T. Hauschild, S. Stepanovic, and J. Zakrzewska-czerwinska, Staphylococcus 474 stepanovicii sp. nov., a novel novobiocin-resistant oxidase-positive 475 staphylococcal species isolated from wild small mammals, Syst Appl Microbiol, vol.476, issue.477, pp.183-187, 2010.

E. Heikens, A. Fleer, A. Paauw, A. Florijn, and A. Fluit, Comparison of Genotypic and Phenotypic Methods for Species-Level Identification of Clinical Isolates of Coagulase-Negative Staphylococci, Journal of Clinical Microbiology, vol.43, issue.5, pp.2286-2290, 2005.
DOI : 10.1128/JCM.43.5.2286-2290.2005

S. Igimi, E. Takahashi, and T. Mitsuoka, Staphylococcus schleiferi subsp. coagulans subsp. nov., Isolated from the External Auditory Meatus of Dogs with External Ear Otitis, International Journal of Systematic Bacteriology, vol.40, issue.4, pp.409-411, 1990.
DOI : 10.1099/00207713-40-4-409

J. Etienne and F. Vandenesch, Relationships between Staphylococcus 485 aureus genetic background, virulence factors, agr groups (alleles), and human 486 disease, Infect Immun, vol.70, pp.631-641, 2002.

D. Ke, F. Picard, F. Martineau, C. Menard, P. Roy et al., Development of a PCR assay for rapid detection of enterococci, J Clin 489 Microbiol, vol.488, issue.490, pp.3497-3503, 1999.

J. Song and E. Kim, Comparison of the MicroScan, VITEK 2, and Crystal 492 GP with 16S rRNA sequencing and MicroSeq 500 v2.0 analysis for coagulase- 493 negative Staphylococci, BMC Microbiol, vol.8, pp.233-494, 2008.

P. Leblanc and A. Ljungh, Ribotype delineation and description of 497 Staphylococcus sciuri subspecies and their potential as reservoirs of 498 methicillin resistance and staphylolytic enzyme genes, Int J Syst Bacteriol Kloos WE, vol.499, issue.24, pp.313-323, 1997.

E. Muller, M. Weinstein, and S. Mirrett, Staphylococcus hominis subsp. 502 novobiosepticus subsp. nov., a novel trehalose-and N-acetyl-D-glucosamine- 503 negative, novobiocin-and multiple-antibiotic-resistant subspecies isolated 504 from human blood cultures, Int J Syst Bacteriol, vol.48, issue.505, pp.799-812, 1998.

A. Kwok and A. Chow, Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.53, issue.1, pp.87-92, 2003.
DOI : 10.1099/ijs.0.02210-0

A. Kwok, S. Su, R. Reynolds, S. Bay, Y. Av-gay et al., Species identification and phylogenetic relationships based on partial 510 HSP60 gene sequences within the genus Staphylococcus Differentiation of 513 Staphylococcus spp. by terminal-restriction fragment length polymorphism 514 analysis of glyceraldehyde-3-phosphate dehydrogenase-encoding gene, Int J Syst Bacteriol J 515 Microbiol Methods, vol.509, issue.70, pp.491181-1192542, 1999.

B. Ghebremedhin, K. Moder, W. Konig, and B. Konig, Comparative 517 study using various methods for identification of Staphylococcus species in 518 clinical specimens, J Clin Microbiol, vol.44, issue.519, pp.2824-2830, 2006.

R. Marsou, M. Bes, M. Boudouma, Y. Brun, H. Meugnier et al., Distribution of Staphylococcus sciuri subspecies among 521 human clinical specimens, and profile of antibiotic resistance, Res Microbiol, vol.522, issue.523, pp.531-541, 1999.

F. Martineau, F. Picard, D. Ke, S. Paradis, P. Roy et al., Development of a PCR assay for identification of staphylococci at 525 genus and species levels Sequencing and staphylococci identification, J Clin Microbiol Emerg Infect Dis, vol.524, issue.12, pp.2541-2547, 2001.

M. Mendoza, H. Meugnier, M. Bes, E. J. Freney, and J. , Identification of 530 Staphylococcus species by 16S-23S rDNA intergenic spacer PCR analysis, pp.1049-1055, 1998.

S. Mignard and J. Flandrois, Identification of Mycobacterium using the EF- 533 Tu encoding (tuf) gene and the tmRNA encoding (ssrA) gene, J Med Microbiol, vol.534, issue.56, pp.1033-1041, 2007.

B. Modun, A. Cockayne, R. Finch, and P. Williams, The Staphylococcus aureus and Staphylococcus epidermidis transferrin-binding proteins are expressed in vivo during infection, Microbiology, vol.144, issue.4, pp.1005-1012, 1998.
DOI : 10.1099/00221287-144-4-1005

I. Sedlacek, Staphylococcus microti sp. nov., isolated from the common 540 vole (Microtus arvalis), Int J Syst Evol Microbiol, vol.60, issue.541, pp.566-573, 2010.

A. Piette and G. Verschraegen, Role of coagulase-negative staphylococci in human disease, Veterinary Microbiology, vol.134, issue.1-2, pp.45-54, 2009.
DOI : 10.1016/j.vetmic.2008.09.009
URL : https://hal.archives-ouvertes.fr/hal-00532477

C. Poyart, G. Quesne, C. Boumaila, and P. Trieu-cuot, Rapid and Accurate Species-Level Identification of Coagulase-Negative Staphylococci by Using the sodA Gene as a Target, Journal of Clinical Microbiology, vol.39, issue.12, pp.4296-4301, 2001.
DOI : 10.1128/JCM.39.12.4296-4301.2001

A. Probst, C. Hertel, L. Richter, L. Wassill, W. Ludwig et al., Staphylococcus condimenti sp. nov., from soy sauce mash, and Staphylococcus carnosus (Schleifer and Fischer 1982) subsp. utilis subsp. nov., International Journal of Systematic Bacteriology, vol.48, issue.3, pp.651-658, 1998.
DOI : 10.1099/00207713-48-3-651

B. Regnault, F. Grimont, and P. Grimont, Universal ribotyping method using 551 a chemically labelled oligonucleotide probe mixture Riesen A, Perreten V (2009) Staphylococcus rostri sp. nov., a hemolytic 554 bacterium isolated from the nose of healthy pigs, Res Microbiol Int J Syst Evol Microbiol, vol.148, issue.555, pp.649-552, 1997.

N. Saitou and M. Nei, The neighbor-joining method: a new method for 556 reconstructing phylogenetic trees, Mol Biol Evol, vol.4, issue.557, pp.406-425, 1987.

K. Schleifer, S. Meyer, and M. Rupprecht, Reclassification of phenotypically identified staphylococcus intermedius 559 strains Relatedness among coagulase- 561 negative staphylococci: deoxyribonucleic acid reassociation and comparative 562 immunological studies, J Clin Microbiol Arch Microbiol, vol.45, issue.563, pp.2770-2778, 1979.

P. Seng, M. Drancourt, F. Gouriet, L. Scola, B. Fournier et al., Ongoing Revolution in Bacteriology: Routine Identification of Bacteria by Matrix???Assisted Laser Desorption Ionization Time???of???Flight Mass Spectrometry, Clinical Infectious Diseases, vol.49, issue.4, pp.543-551, 2009.
DOI : 10.1086/600885

T. Ezaki, dnaJ gene sequence-based assay for species identification 572 and phylogenetic grouping in the genus Staphylococcus, Int J Syst Evol 573 Microbiol, vol.57, issue.574, pp.25-30, 2007.

T. Spanu, D. Carolis, E. Fiori, B. Sanguinetti, M. et al., Posteraro 575 B (2010) Evaluation of matrix-assisted laser desorption ionization-time-of-flight 576 mass spectrometry in comparison to rpoB gene sequencing for species 577 identification of bloodstream infection staphylococcal isolates, Clin Microbiol, vol.578, issue.579, p.48

T. Takahashi, I. Satoh, and N. Kikuchi, Phylogenetic relationships of 38 taxa 584 of the genus Staphylococcus based on 16S rRNA gene sequence analysis, 1999.

C. Mouren and E. J. , Staphylococcus pasteuri-specific oligonucleotide 588 probes derived from a random amplified DNA fragment, FEMS Microbiol Lett, vol.589, issue.590, pp.147-152, 1995.

P. Vannuffel, M. Heusterspreute, M. Bouyer, B. Vandercam, P. M. Gala et al., Molecular characterization of femA from Staphylococcus hominis and 592 Staphylococcus saprophyticus, and femA-based discrimination of 593 staphylococcal species Pathogenesis of infections due to 595 coagulase-negative staphylococci, Res Microbiol Lancet Infect Dis, vol.150, issue.2, pp.591129-141, 1999.

G. Naharro, Glyceraldehyde-3-phosphate dehydrogenase-encoding 598 gene as a useful taxonomic tool for Staphylococcus spp, J Clin Microbiol, vol.599, issue.600, pp.4351-4355, 2000.

S. Bacillus-subtilis, S. Caprae, S. Capitis-subsp-capitis, S. Capitis-subsp-urealyticus, S. Warneri et al., hominis subsp hominis S. hominis subsp novobiosepticus S. lugdunensis S. lentus S. sciuri subsp carnaticus S. sciuri subsp sciuri S. sciuri subsp rodentium S. vitulinus S. fleurettii S. aureus subsp aureus S. aureus subsp anaerobius S. simiae S