M. Baklouti, F. Diaz, C. Pinazo, V. Faure, and B. Queguiner, Investigation of mechanistic formulations depicting phytoplankton dynamics for models of marine pelagic ecosystems and description of a new model, Progress in Oceanography, vol.71, issue.1, pp.1-33, 2006.
DOI : 10.1016/j.pocean.2006.05.002
URL : https://hal.archives-ouvertes.fr/hal-00695892

M. Baklouti, V. Faure, L. Pawlowski, and A. Sciandra, Investigation and sensitivity analysis of a mechanistic phytoplankton model implemented in a new modular numerical tool (Eco3M) dedicated to biogeochemical modelling, Progress in Oceanography, vol.71, issue.1, pp.34-58, 2006.
DOI : 10.1016/j.pocean.2006.05.003
URL : https://hal.archives-ouvertes.fr/hal-00746680

J. Behrenfeld, O. Prasil, Z. S. Kolber, M. Babin, and P. G. Falkowski, Compensatory changes in Photosystem II electron turnover rates protect photosynthesis from photoinhibition, Photosynthesis Research, vol.58, issue.3, pp.259-268, 1998.
DOI : 10.1023/A:1006138630573

D. Cianelli, M. Ribera-d-'alcala-', V. Saggiomo, and E. Zambianchi, Coupling mixing and photophysiological response of Antarctic plankton: a Lagrangian approach, Antarctic Science, vol.16, issue.2, pp.133-142, 2004.
DOI : 10.1017/S0954102004001968

J. J. Cullen and M. R. Lewis, The kinetics of algal photoadaptation in the context of vertical mixing, Journal of Plankton Research, vol.10, issue.5, pp.1039-1063, 1988.
DOI : 10.1093/plankt/10.5.1039

K. L. Denman and J. Marra, Marine Interface Ecohydrodynamics, chapter Modelling the time dependent photoadaptation of phytoplankton to fluctuating light, pp.341-359, 1986.

Z. Dubinsky, P. G. Falkowski, and K. Wyman, Light Harvesting and Utilization by Phytoplankton, Plant and Cell Physiology, vol.27, issue.7, pp.1335-1349, 1986.
DOI : 10.1093/oxfordjournals.pcp.a077232

J. A. Dusenberry, Steady-state single cell model simulations of photoacclimation in a vertically mixed layer: implications for biological tracer studies and primary productivity, Journal of Marine Systems, vol.24, issue.3-4, pp.201-220, 2000.
DOI : 10.1016/S0924-7963(99)00086-X

P. G. Falkowski and T. G. Owens, Light--Shade Adaptation : TWO STRATEGIES IN MARINE PHYTOPLANKTON, PLANT PHYSIOLOGY, vol.66, issue.4, pp.592-595, 1980.
DOI : 10.1104/pp.66.4.592

P. G. Falkowski and C. D. Wirick, A simulation model of the effects of vertical mixing on primary productivity, Marine Biology, vol.38, issue.1, pp.69-75, 1981.
DOI : 10.1007/BF00397069

D. Farmer and C. Mcneil, Photoadaptation in a convective layer, Deep Sea Research Part II: Topical Studies in Oceanography, vol.46, issue.11-12, pp.2433-2446, 1999.
DOI : 10.1016/S0967-0645(99)00070-3

K. J. Flynn, H. L. Marshall, and R. J. Geider, A comparison of two N-irradiance interaction models of phytoplankton growth, Limnology and Oceanography, vol.46, issue.7, pp.1794-1802, 2001.
DOI : 10.4319/lo.2001.46.7.1794

J. S. Franks and J. Marra, A simple new formulation for phytoplankton photoresponse and an application in a wind-driven mixed-layer model

E. Garcia-mendoza, H. C. Matthijs, H. Schubert, and L. R. Mur, Nonphotochemical quenching of chlorophyll fluorescence in chlorella fusca acclimated to constant and dynamic light conditions, Photosynthesis Research, vol.74, issue.3, pp.303-315, 2002.
DOI : 10.1023/A:1021230601077

R. J. Geider, H. L. Macintyre, and T. M. Kana, A dynamic regulatory model of phytoplanktonic acclimation to light, nutrients, and temperature, Limnology and Oceanography, vol.43, issue.4, pp.679-694, 1998.
DOI : 10.4319/lo.1998.43.4.0679

B. P. Han, A Mechanistic Model of Algal Photoinhibition Induced by Photodamage to Photosystem-II, Journal of Theoretical Biology, vol.214, issue.4, pp.519-527, 2002.
DOI : 10.1006/jtbi.2001.2468

H. Havelková-dou?ová, O. Prá?il, and M. J. Behrenfeld, Photoacclimation of Dunaliella tertiolecta (Chlorophyceae) Under Fluctuating Irradiance, Photosynthetica, vol.42, issue.2, pp.273-281, 2004.
DOI : 10.1023/B:PHOT.0000040600.04502.32

B. Verspagen and . Sommeijer, Changes in turbulent mixing shift competition for light between phytoplankton species, Ecology, vol.85, pp.2960-2970, 2004.

B. W. Ibelings, B. M. Kroon, and L. R. Mur, Acclimation of photosystem II in a cyanobacterium and a eukaryotic green alga to high and fluctuating photosynthetic photon flux densities, simulating light regimes induced by mixing in lakes, New Phytologist, vol.106, issue.3, pp.407-424, 1994.
DOI : 10.1007/BF00402006

D. Kamykowski, H. Yamazaki, and G. S. Janowitz, A Lagrangian model of phytoplankton photosynthetic response in the upper mixed layer, Journal of Plankton Research, vol.16, issue.8, pp.1059-1069, 19941994-01-01.
DOI : 10.1093/plankt/16.8.1059

J. Lavaud, B. Rousseau, H. J. Van-gorkom, and A. L. Etienne, Influence of the Diadinoxanthin Pool Size on Photoprotection in the Marine Planktonic Diatom Phaeodactylum tricornutum, PLANT PHYSIOLOGY, vol.129, issue.3, pp.1398-1406, 2002.
DOI : 10.1104/pp.002014
URL : https://hal.archives-ouvertes.fr/hal-01090463

L. Macintyre and R. J. Geider, Regulation of Rubisco activity and its potential effect on photosynthesis during mixing in a turbid estuary, Marine Ecology Progress Series, vol.144, pp.247-264, 1996.
DOI : 10.3354/meps144247

H. L. Macintyre, T. D. Sharkey, and R. J. Geider, Activation and deactivation of ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) in three marine microalgae, Photosynthesis Research, vol.51, issue.2, pp.93-106, 1997.
DOI : 10.1023/A:1005755621305

H. L. Macintyre, T. M. Kana, T. Anning, and R. J. Geider, PHOTOACCLIMATION OF PHOTOSYNTHESIS IRRADIANCE RESPONSE CURVES AND PHOTOSYNTHETIC PIGMENTS IN MICROALGAE AND CYANOBACTERIA1, Journal of Phycology, vol.38, issue.1, pp.17-38, 2002.
DOI : 10.1046/j.1529-8817.2002.00094.x

J. Marra, Effect of short-term variations in light intensity on photosynthesis of a marine phytoplankter: A laboratory simulation study, Marine Biology, vol.2, issue.3, pp.191-202, 1978.
DOI : 10.1007/BF00390680

C. M. Moore, D. J. Suggett, A. E. Hickman, Y. N. Kim, J. F. Tweddle et al., Phytoplankton photoacclimation and photoadaptation in response to environmental gradients in a shelf sea, Limnology and Oceanography, vol.51, issue.2, pp.936-949, 2006.
DOI : 10.4319/lo.2006.51.2.0936

T. Nagai, H. Yamazaki, and D. Kamikowski, A Lagrangian photoresponse model coupled with 2nd-order turbulence closure, Marine Ecology Progress Series, vol.265, pp.17-30, 2003.
DOI : 10.3354/meps265017

M. J. Perry, M. C. Talbot, and R. S. Alberte, Photoadaption in marine phytoplankton: Response of the photosynthetic unit, Marine Biology, vol.24, issue.2-3, pp.91-101, 1981.
DOI : 10.1007/BF00388170

T. Platt, C. L. Gallegos, and W. G. Harrison, Photoinhibition of photosynthesis in natural assemblages of marine phytoplankton, Journal of Marine Research, vol.38, pp.687-701, 1980.

M. Ragni and M. Ribera-d-'alcala, Circadian variability in the photobiology of Phaeodactylum tricornutum: pigment content, Journal of Plankton Research, vol.29, issue.2, pp.141-156, 2007.
DOI : 10.1093/plankt/fbm002

O. N. Ross, C. M. Moore, D. J. Suggett, H. L. Macintyre, and R. J. Geider, A model of photosynthesis and photo-protection based on reaction center damage and repair, Limnology and Oceanography, vol.53, issue.5, pp.1835-1852, 2008.
DOI : 10.4319/lo.2008.53.5.1835

E. Sakshaug, A. Bricaud, Y. Dandonneau, P. G. Falkowski, D. A. Kiefer et al., Parameters of photosynthesis: definitions, theory and interpretation of results, Journal of Plankton Research, vol.19, issue.11, pp.1637-1670, 1997.
DOI : 10.1093/plankt/19.11.1637

M. A. Van-leeuwe, B. Van-sikkelerus, W. W. Gieskes, and J. Stefels, Taxon-specific differences in photoacclimation to fluctuating irradiance in an Antarctic diatom and a green flagellate, Marine Ecology Progress Series, vol.288, pp.9-19, 2005.
DOI : 10.3354/meps288009

W. F. Vincent, N. Bertrand, and J. J. Frenette, Photoadaptation to intermittent light across the St

H. Wagner, T. Jakob, and C. Wilhelm, Balancing the energy flow from captured light to biomass under fluctuating light conditions, New Phytologist, vol.34, issue.1, pp.95-108, 2006.
DOI : 10.1098/rstb.2000.0712