VARNA: Interactive drawing and editing of the RNA secondary structure.

Kévin Darty 1 Alain Denise 1, 2, 3 Yann Ponty 1, 4, *
* Corresponding author
3 AMIB - Algorithms and Models for Integrative Biology
LIX - Laboratoire d'informatique de l'École polytechnique [Palaiseau], LRI - Laboratoire de Recherche en Informatique, UP11 - Université Paris-Sud - Paris 11, Inria Saclay - Ile de France
Abstract : DESCRIPTION: VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases. FEATURES: VARNA implements four drawing algorithms, supports input/output using the classic formats dbn, ct, bpseq and RNAML and exports the drawing as five picture formats, either pixel-based (JPEG, PNG) or vector-based (SVG, EPS and XFIG). It also allows manual modification and structural annotation of the resulting drawing using either an interactive point and click approach, within a web server or through command-line arguments. AVAILABILITY: VARNA is a free software, released under the terms of the GPLv3.0 license and available at http://varna.lri.fr. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Liste complète des métadonnées

Cited literature [10 references]  Display  Hide  Download

https://hal.archives-ouvertes.fr/hal-00432548
Contributor : Yann Ponty <>
Submitted on : Monday, November 16, 2009 - 4:02:52 PM
Last modification on : Wednesday, March 27, 2019 - 4:41:29 PM
Document(s) archivé(s) le : Thursday, June 17, 2010 - 6:43:00 PM

File

VARNA-Bioinfo-R2-NoHighlight.p...
Publisher files allowed on an open archive

Identifiers

Citation

Kévin Darty, Alain Denise, Yann Ponty. VARNA: Interactive drawing and editing of the RNA secondary structure.. Bioinformatics, Oxford University Press (OUP), 2009, 25 (15), pp.1974-5. ⟨10.1093/bioinformatics/btp250⟩. ⟨hal-00432548⟩

Share

Metrics

Record views

963

Files downloads

840