Reconstructing phylogenies from gene content and gene-order data, Mathematics of Evolution and Phylogeny, pp.321-352, 2005. ,
Using median sets for inferring phylogenetic trees, Bioinformatics, vol.23, pp.129-135, 2007. ,
Transforming cabbage into turnip: Polynomial algorithm for sorting signed permutations by reversals, Journal of the ACM, vol.46, issue.1, pp.1-27, 1999. ,
Efficient sorting of genomic permutations by translocation, inversion and block interchange, Bioinformatics, vol.21, issue.16, pp.3340-3346, 2005. ,
The reversal median problem, INFORMS Journal on Computing, vol.15, pp.93-113, 2003. ,
Inversion medians outperform breakpoint medians in phylogeny reconstruction from gene-order data, Proceedings of the Second International Workshop on Algorithms in Bioinformatics, vol.2452, pp.521-536, 2002. ,
Improving inversion median computation using commuting reversals and cycle information, Lecture Notes in Computer Science, vol.4751, pp.30-44, 2007. ,
Genome-scale evolution: Reconstructing gene orders in the ancestral species, Genome Research, vol.12, issue.1, pp.26-36, 2002. ,
Genomic midpoints: Computation and evolutionary implications, 2007. ,
Tabu Search, 1997. ,
URL : https://hal.archives-ouvertes.fr/hal-01412610
Iterated local search for the quadratic assignment problem, European Journal of Operational Research, vol.174, issue.3, pp.1519-1539, 2006. ,
A unifying view of genome rearrangements, Proceedings of WABI 2006, vol.4175, pp.163-173, 2006. ,
Multi-break rearrangements and chromosomal evolution, Theoretical Computer Science, 2007. ,
Noise strategies for improving local search, Proceedings of the 12th National Conference on Artificial Intelligence, pp.337-343, 1994. ,
Measuring the searched space to guide efficiency: The principle and evidence on constraint satisfaction, Proceedings of the 7th International Conference on Parallel Problem Solving from Nature, vol.2439, pp.23-32, 2002. ,
F-race: Racing methods for the selection of the best, 2005. ,
The Problem of Tuning Metaheuristics as Seen from a Machine Learning Perspective, 2004. ,
Reactive local search for the maximum clique problem, Algorithmica, vol.29, issue.4, pp.610-637, 2001. ,
Reversal and transposition medians, Theoretical Computer Science, vol.374, issue.1-3, 2007. ,
Effective Stochastic Local Search Algorithms for the Genomic Median Problem, Doctoral Symposium on Engineering Stochastic Local Search Algorithms (SLS-DS), pp.1-5, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-01542514