saccharomyces genome database, 2008. ,
Color-coding, Journal of the ACM, vol.42, issue.4, pp.844-856, 1995. ,
DOI : 10.1145/210332.210337
Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990. ,
DOI : 10.1016/S0022-2836(05)80360-2
The universal protein resource (UniProt) NAR, p.154, 2005. ,
Parameterized Algorithms and Hardness Results for Some Graph Motif Problems, In CPM LNCS, vol.5029, pp.31-43, 2008. ,
DOI : 10.1007/978-3-540-69068-9_6
Querying Protein-Protein Interaction Networks, ISBRA, pp.52-62, 2009. ,
DOI : 10.1093/nar/30.1.303
URL : https://hal.archives-ouvertes.fr/hal-00620391
Topology-free querying of protein interaction networks, 2009. ,
Gene Ontology: tool for the unification of biology, Nature Genet, vol.25, pp.25-29, 2000. ,
Maximum Motif Problem in Vertex-Colored Graphs, CPM QNet: A Tool for Querying Protein Interaction Networks. RECOMB, pp.1-15, 2007. ,
DOI : 10.1073/pnas.0409522102
URL : https://hal.archives-ouvertes.fr/hal-00416463
Sharp Tractability Borderlines for Finding Connected Motifs in Vertex-Colored Graphs, ICALP, pp.340-351, 2007. ,
DOI : 10.1007/978-3-540-73420-8_31
URL : https://hal.archives-ouvertes.fr/hal-00417928
Functional organization of the yeast proteome by systematic analysis of protein complexes, Nature, vol.415, issue.6868, pp.141-147, 2002. ,
DOI : 10.1038/415141a
Systematic identification of protein complexes in Saccharomyces cerevisae by mass spectrometry, Nature, issue.6868, pp.415180-183, 2002. ,
Ensembl 2009, Nucleic Acids Research, vol.37, issue.Database, p.690, 2009. ,
DOI : 10.1093/nar/gkn828
URL : http://doi.org/10.1093/nar/gkn828
Conserved pathways within bacteria and yeast as revealed by global protein network alignment, Proceedings of the National Academy of Sciences, vol.100, issue.20, pp.11394-11399, 2003. ,
DOI : 10.1073/pnas.1534710100
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC208768
Web Services at the European Bioinformatics Institute, Nucleic Acids Research, vol.35, issue.Web Server, p.6, 2007. ,
DOI : 10.1093/nar/gkm291
Motif Search in Graphs: Application to Metabolic Networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.3, issue.4, pp.360-368, 2006. ,
DOI : 10.1109/TCBB.2006.55
URL : https://hal.archives-ouvertes.fr/hal-00427984
On extending sat solvers for pb problems, RCRA, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00466227
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles, Proceedings of the National Academy of Sciences, vol.96, issue.8, pp.964285-4288, 1999. ,
DOI : 10.1073/pnas.96.8.4285
Alignment of metabolic pathways, Bioinformatics, vol.21, issue.16, pp.3401-3408, 2005. ,
DOI : 10.1093/bioinformatics/bti554
Comprehensive curation and analysis of global interaction networks in saccharomyces cerevisiae, Journal of Biology, 2006. ,
CO- RUM: the comprehensive resource of mammalian protein complexes. NAR, 2007. ,
Theory of Linear and Integer Programming, 1998. ,
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks, Genome Research, vol.13, issue.11, pp.2498-2504, 2003. ,
DOI : 10.1101/gr.1239303
QPath: a method for querying pathways in a protein-protein interaction network, BMC Bioinformatics, vol.7, issue.1, p.199, 2006. ,
DOI : 10.1186/1471-2105-7-199
BioMart ??? biological queries made easy, BMC Genomics, vol.10, issue.1, p.22, 2009. ,
DOI : 10.1186/1471-2164-10-22
URL : http://doi.org/10.1186/1471-2164-10-22
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisae, Nature, vol.403, issue.6770, pp.623-627, 2000. ,