Comparing Bacterial Genomes by Searching Their Common Intervals

Abstract : Comparing bacterial genomes implies the use of a dedicated measure. It relies on comparing circular genomes based on a set of conserved genes. Following this assumption, the common interval appears to be a good candidate. For evidences, we propose herein an approach to compute the common intervals between two circular genomes that takes into account duplications. Its application on a concrete case, comparing E. coli and V. cholerae, is accurate. It indeed emphasizes sets of conserved genes that present high impacts on bacterial functions.
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https://hal.archives-ouvertes.fr/hal-00415955
Contributor : Damien Eveillard <>
Submitted on : Friday, September 11, 2009 - 3:08:10 PM
Last modification on : Thursday, April 5, 2018 - 10:36:49 AM

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Sébastien Angibaud, Damien Eveillard, Guillaume Fertin, Irena Rusu. Comparing Bacterial Genomes by Searching Their Common Intervals. Bioinformatics and Computational Biology, Apr 2009, New Orleans, United States. pp.102--113, ⟨10.1007/978-3-642-00727-9_12⟩. ⟨hal-00415955⟩

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