R. M. Berka, X. Cui, and C. Yanofsky, Genomewide transcriptional changes associated with genetic alterations and nutritional supplementation affecting tryptophan metabolism in Bacillus subtilis, Proc. Natl. Acad. Sci. USA, vol.100, pp.5682-5687, 2003.

F. Calevro, H. Charles, N. Reymond, V. Dugas, J. P. Cloarec et al., Assessment of 35mer aminomodified oligonucleotide based microarray with bacterial samples, J. Microbiol. Methods, vol.57, pp.207-218, 2004.
URL : https://hal.archives-ouvertes.fr/hal-00402180

H. Charles, F. Calevro, J. Vinuelas, J. M. Fayard, and Y. Rahbe, Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum, Nucleic Acids Res, vol.34, pp.4583-4592, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00391277

X. Cui, J. T. Hwang, J. Qiu, N. J. Blades, and G. A. Churchill, Improved statistical tests for differential gene expression by shrinking variance components estimates, Biostatistics, vol.6, pp.59-75, 2005.

K. Dittmar, E. Mobley, A. Radek, and T. Pan, Exploring the regulation of tRNA distribution on the genomic slide, J. Mol. Biol, vol.337, pp.31-47, 2004.

C. J. Dorman and P. Deighan, Regulation of gene expression by histone-like proteins in bacteria, Curr. Opin. Genet. Dev, vol.13, pp.179-184, 2003.

A. E. Douglas, Buchnera bacteria and other symbionts of aphids, pp.23-38, 2003.

A. E. Douglas, L. B. Minto, and T. L. Wilkinson, Quantifying nutrient production by the microbial symbionts in an aphid, J. Exp. Biol, vol.204, pp.349-358, 2001.

A. E. Douglas, D. R. Price, L. B. Minto, E. Jones, K. V. Pescod et al., Sweet problems: insect traits defining the limits to dietary sugar utilisation by the pea aphid, Acyrthosiphon pisum, J. Exp. Biol, vol.209, pp.1395-1403, 2006.

D. A. Drummond, J. D. Bloom, C. Adami, C. O. Wilke, and F. H. Arnold, Why highly expressed proteins evolve slowly, Proc. Natl. Acad. Sci. USA, vol.102, pp.14338-14343, 2005.

S. Dudoit, Y. H. Yang, M. J. Callow, and T. Speed, Statistical methods for identifying genes with differential expression in replicated cDNA microarray experiments, Statistica Sinica, vol.12, pp.111-139, 2002.

V. Emilsson, A. K. Naslund, and C. G. Kurland, Growth-rate-dependent accumulation of twelve tRNA species in Escherichia coli, J. Mol. Biol, vol.230, pp.483-491, 1993.

G. Febvay, I. Liadouze, J. Guillaud, and G. Bonnot, Analysis of energetic amino acid metabolism in Acyrthosiphon pisum: a multidimensional approach to amino acid metabolism in aphids, Arch. Insect Biochem. Physiol, vol.29, pp.45-69, 1995.

G. Febvay, Y. Rahbe, M. Rynkiewicz, J. Guillaud, and G. Bonnot, Fate of dietary sucrose and neosynthesis of amino acids in the pea aphid, Acyrthosiphon pisum, reared on different diets, J. Exp. Biol, vol.202, pp.2639-2652, 1999.
URL : https://hal.archives-ouvertes.fr/hal-00402190

F. Hommais, E. Krin, C. Laurent-winter, O. Soutourina, A. Malpertuy et al., Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS, Mol. Microbiol, vol.40, pp.20-36, 2001.

A. J. Karley, A. E. Douglas, and W. E. Parker, Amino acid composition and nutritional quality of potato leaf phloem sap for aphids, J. Exp. Biol, vol.205, pp.3009-3018, 2002.

A. Kelly, M. D. Goldberg, R. K. Carroll, V. Danino, J. C. Hinton et al., A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium, Microbiology, vol.150, pp.2037-2053, 2004.

I. Liadouze, G. Febvay, J. Guillaud, and G. Bonnot, Metabolic fate of energetic amino acids in the aposymbiotic pea aphid Acyrthosiphon pisum (Harris) (Homoptera: Aphididae), Symbiosis, vol.21, pp.115-127, 1996.

K. Majander, L. Anton, J. Antikainen, H. Lang, M. Brummer et al., Extracellular secretion of polypeptides using a modified Escherichia coli flagellar secretion apparatus, Nat. Biotechnol, vol.23, pp.475-481, 2005.

N. A. Moran, H. E. Dunbar, and J. L. Wilcox, Regulation of transcription in a reduced bacterial genome: nutrient-provisioning genes of the obligate symbiont Buchnera aphidicola, J. Bacteriol, vol.187, pp.4229-4237, 2005.

E. M. Panina, A. G. Vitreschak, A. A. Mironov, and M. S. Gelfand, Regulation of aromatic amino acid biosynthesis in gamma-proteobacteria, J. Mol. Microbiol. Biotechnol, vol.3, pp.529-543, 2001.

E. M. Panina, A. G. Vitreschak, A. A. Mironov, and M. S. Gelfand, Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria, FEMS Microbiol. Lett, vol.222, pp.211-220, 2003.

M. D. Prickett, M. Page, A. E. Douglas, and G. H. Thomas, BuchneraBASE: a post-genomic resource for Buchnera sp, Bioinformatics, vol.22, pp.641-642, 2006.

W. A. Prosser and A. E. Douglas, A test of the hypotheses that nitrogen is upgraded and recycled in an aphid (Acyrthosiphon pisum) symbiosis, J. Insect Physiol, vol.38, pp.93-99, 1992.

N. Reymond, H. Charles, L. Duret, F. Calevro, G. Beslon et al., ROSO: optimizing oligonucleotide probes for microarrays, Bioinformatics, vol.20, pp.271-273, 2004.

E. Rocha and A. Danchin, Essentiality, not expressiveness, drives gene-strand bias in bacteria, Nat. Genet, vol.34, pp.377-378, 2003.

J. P. Sandstrom and N. A. Moran, Amino acid budgets in three aphid species using the same host plant, Physiol. Entomol, vol.26, pp.202-211, 2001.

S. Shigenobu, H. Watanabe, M. Hattori, Y. Sasaki, and H. Ishikawa, Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp, Nature, vol.407, pp.81-86, 2000.

I. Tamas, L. Klasson, B. Canback, A. K. Naslund, A. S. Eriksson et al., 50 million years of genomic stasis in endosymbiotic bacteria, Science, vol.296, pp.2376-2379, 2002.

H. Tao, C. Bausch, C. Richmond, F. R. Blattner, and T. Conway, Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media, J. Bacteriol, vol.181, pp.6425-6440, 1999.

G. C. Tseng, M. K. Oh, L. Rohlin, J. C. Liao, and W. H. Wong, Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects, Nucleic Acids Res, vol.29, pp.2549-2557, 2001.

V. G. Tusher, R. Tibshirani, and G. Chu, Significance analysis of microarrays applied to the ionizing radiation response, Proc. Natl. Acad. Sci. USA, vol.98, pp.5116-5121, 2001.

J. L. Wilcox, H. E. Dunbar, R. D. Wolfinger, and N. A. Moran, Consequences of reductive evolution for gene expression in an obligate endosymbiont, Mol. Microbiol, vol.48, pp.1491-1500, 2003.

T. L. Wilkinson and A. E. Douglas, Phloem amino acids and the host plant range of the polyphagous aphid, Aphis fabae. Entomol. Exp. Appl, vol.106, pp.103-113, 2003.

A. C. Wilson, H. E. Dunbar, G. K. Davis, W. B. Hunter, D. L. Stern et al., A dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola, BMC Genomics, vol.7, p.50, 2006.

S. Wu, M. K. Kerr, X. Cui, and G. A. Churchill, MAANOVA: a software package for the analysis of spotted cDNA microarray experiments, p.455, 2003.

A. A. Reymond, . Environ, and . Microbiol,