Derivations and genotypes of some mutant derivatives of Escherichia coli K-12 In Escherichia coli and Salmonella typhimurium: cellular and molecular biology, 2004. ,
Laboratory strains of Escherichia coli: model citizens or deceitful delinquents growing old disgracefully?, Molecular Microbiology, vol.103, issue.4, pp.881-885, 2007. ,
DOI : 10.1073/pnas.252529799
Escherichia coli Habitats, Cell Types, and Molecular Mechanisms of Gene Control, The American Naturalist, vol.122, issue.6, pp.732-744, 1983. ,
DOI : 10.1086/284168
Escherichia coli Virulence mechanisms of a versatile pathogen, 2002. ,
Shigella and enteroinvasive Escherichia coli strains are derived from distinct ancestral strains of E. coli, Microbiology, vol.144, issue.9, pp.2667-2672, 1998. ,
DOI : 10.1099/00221287-144-9-2667
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics, Proceedings of the National Academy of Sciences, vol.97, issue.19, pp.10567-10572, 2000. ,
DOI : 10.1073/pnas.180094797
The Evolutionary History of Shigella and Enteroinvasive Escherichia coli Revised, Journal of Molecular Evolution, vol.57, issue.2, pp.140-148, 2003. ,
DOI : 10.1007/s00239-003-2460-3
Global burden of Shigella infections: implications for vaccine development and implementation of control strategies, Bull World Health Organ, vol.77, pp.651-66, 1999. ,
The global burden of diarrhoeal disease, as estimated from studies published between 1992 and, Bull World Health Organ, vol.81, pp.197-204, 2000. ,
Medical and economic impact of extraintestinal infections due to Escherichia coli: focus on an increasingly important endemic problem, Microbes and Infection, vol.5, issue.5, pp.449-456, 2003. ,
DOI : 10.1016/S1286-4579(03)00049-2
Standard reference strains of Escherichia coli from natural populations, J Bacteriol, vol.157, pp.690-693, 1984. ,
Genetic structure and variation in natural populations of Escherichia coli, Escherichia coli and Salmonella typhimurium: cellular and molecular biology, pp.1625-1648, 1987. ,
Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli., Journal of Bacteriology, vol.172, issue.11, pp.6175-6181, 1990. ,
DOI : 10.1128/jb.172.11.6175-6181.1990
Sex in Escherichia coli does not disrupt the clonal structure of the population: evidence from random amplified polymorphic DNA and restriction-fragment-length polymorphism, Journal of Molecular Evolution, vol.18, issue.4, pp.440-448, 1995. ,
DOI : 10.1007/BF00160315
Rapid and Simple Determination of the Escherichia coli Phylogenetic Group, Applied and Environmental Microbiology, vol.66, issue.10, pp.4555-4558, 2000. ,
DOI : 10.1128/AEM.66.10.4555-4558.2000
Decreasing the effects of horizontal gene transfer on bacterial phylogeny: the Escherichia coli case study, Molecular Phylogenetics and Evolution, vol.30, issue.1, pp.243-250, 2004. ,
DOI : 10.1016/S1055-7903(03)00181-7
Sex and virulence in Escherichia coli: an evolutionary perspective, Molecular Microbiology, vol.179, issue.5, pp.1136-1151, 2006. ,
DOI : 10.1111/j.1365-2958.2005.04985.x
URL : https://hal.archives-ouvertes.fr/hal-00174910
Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method, Environmental Microbiology, vol.60, issue.10, pp.2484-2496, 2008. ,
DOI : 10.1111/j.1462-2920.2008.01669.x
The influence of ecological factors on the distribution and genetic structure of Escherichia coli In Escherichia coli and Salmonella typhimurium: cellular and molecular biology, 2004. ,
Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution, J Bacteriol, vol.180, pp.1159-1165, 1998. ,
A Specific Genetic Background Is Required for Acquisition and Expression of Virulence Factors in Escherichia coli, Molecular Biology and Evolution, vol.21, issue.6, pp.1085-1094, 2004. ,
DOI : 10.1093/molbev/msh118
The link between phylogeny and virulence in Escherichia coli extraintestinal infection, Infect Immun, vol.67, pp.546-553, 1999. ,
Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches, Environmental Microbiology, vol.61, issue.6, pp.2274-2288, 2007. ,
DOI : 10.1111/j.1365-2958.2006.05172.x
Both Urinary and Rectal Escherichia coli Isolates Are Dominated by Strains of Phylogenetic Group B2, Journal of Clinical Microbiology, vol.40, issue.11, pp.3951-3955, 2002. ,
DOI : 10.1128/JCM.40.11.3951-3955.2002
Large-Scale Population Structure of Human Commensal Escherichia coli Isolates, Applied and Environmental Microbiology, vol.70, issue.9, pp.5698-5700, 2004. ,
DOI : 10.1128/AEM.70.9.5698-5700.2004
Clonal divergence in Escherichia coli as a result of recombination, not mutation, Science, vol.266, issue.5189, pp.1380-1383, 1994. ,
DOI : 10.1126/science.7973728
Evidence for horizontal gene transfer in Escherichia coli speciation, Journal of Molecular Biology, vol.222, issue.4, pp.851-856, 1991. ,
DOI : 10.1016/0022-2836(91)90575-Q
Molecular archaeology of the Escherichia coli genome, Proceedings of the National Academy of Sciences, vol.95, issue.16, pp.9413-9417, 1998. ,
DOI : 10.1073/pnas.95.16.9413
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli, Proceedings of the National Academy of Sciences, vol.99, issue.26, pp.17020-17024, 2002. ,
DOI : 10.1073/pnas.252529799
Molecular and evolutionary relationships among enteric bacteria, Journal of General Microbiology, vol.137, issue.8, pp.1911-1921, 1991. ,
DOI : 10.1099/00221287-137-8-1911
Isolates, in Relation to Accessory Traits, Phylogenetic Group, and Ecological Source, The Journal of Infectious Diseases, vol.194, issue.8, pp.1141-1150, 2006. ,
DOI : 10.1086/507305
The Role of Prophage-like Elements in the Diversity of Salmonella enterica Serovars, Journal of Molecular Biology, vol.339, issue.2, pp.279-300, 2004. ,
DOI : 10.1016/j.jmb.2004.03.058
Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray, Genome Biology, vol.8, issue.12, p.267, 2007. ,
DOI : 10.1186/gb-2007-8-12-r267
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection, Molecular Systems Biology, vol.170, p.8, 2006. ,
DOI : 10.1038/msb4100050
Recognizing the pseudogenes in bacterial genomes, Nucleic Acids Research, vol.33, issue.10, pp.3125-3132, 2005. ,
DOI : 10.1093/nar/gki631
URL : https://hal.archives-ouvertes.fr/hal-00427776
How Essential Are Nonessential Genes?, Molecular Biology and Evolution, vol.22, issue.11, pp.2147-2156, 2005. ,
DOI : 10.1093/molbev/msi211
A coalescent-based method for detecting and estimating recombination from gene sequences, Genetics, vol.160, pp.1231-1241, 2002. ,
Estimating Recombination Rates From Single-Nucleotide Polymorphisms Using Summary Statistics, Genetics, vol.174, issue.3, pp.1517-1528, 2006. ,
DOI : 10.1534/genetics.106.060723
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1667054
Approximate Bayesian computation in population genetics, Genetics, vol.162, pp.2025-2035, 2002. ,
Bayesian Analysis of an Admixture Model With Mutations and Arbitrarily Linked Markers, Genetics, vol.169, issue.3, pp.1727-1738, 2005. ,
DOI : 10.1534/genetics.104.036236
Extraintestinal Virulence Is a Coincidental By-Product of Commensalism in B2 Phylogenetic Group Escherichia coli Strains, Molecular Biology and Evolution, vol.24, issue.11, pp.2373-2384, 2007. ,
DOI : 10.1093/molbev/msm172
URL : https://hal.archives-ouvertes.fr/hal-00554748
Transduction, restriction and recombination patterns in Escherichia coli, Genetics, vol.139, pp.35-43, 1995. ,
Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria, Proceedings of the National Academy of Sciences, vol.94, issue.18, pp.9763-9767, 1997. ,
DOI : 10.1073/pnas.94.18.9763
Comparison of phylogenetic trees, Mathematical Biosciences, vol.53, issue.1-2, pp.131-147, 1981. ,
DOI : 10.1016/0025-5564(81)90043-2
Phylogenetic relationships among clonal groups of extraintestinal pathogenic Escherichia coli as assessed by multi-locus sequence analysis, Microbes and Infection, vol.8, issue.7, pp.1702-1713, 2006. ,
DOI : 10.1016/j.micinf.2006.02.007
Escherichia coli molecular phylogeny using the incongruence length difference test, Molecular Biology and Evolution, vol.15, issue.12, pp.1685-1695, 1998. ,
DOI : 10.1093/oxfordjournals.molbev.a025895
Parallel evolution of virulence in pathogenic Escherichia coli, Nature, vol.406, pp.64-67, 2000. ,
Reduced selection leads to accelerated gene loss in Shigella, Genome Biology, vol.8, issue.8, p.164, 2007. ,
DOI : 10.1186/gb-2007-8-8-r164
Genome phylogeny based on gene content, Nature Genetics, vol.21, issue.1, pp.108-110, 1999. ,
DOI : 10.1038/5052
Genomic islands in pathogenic and environmental microorganisms, Nature Reviews Microbiology, vol.31, issue.5, pp.414-424, 2004. ,
DOI : 10.1006/plas.1997.1280
"Black holes" and bacterial pathogenicity: A large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli, Proceedings of the National Academy of Sciences, vol.95, issue.7, pp.3943-3948, 1998. ,
DOI : 10.1073/pnas.95.7.3943
Role of P-fimbrial-mediated adherence in pyelonephritis and persistence of uropathogenic Escherichia coli (UPEC) in the mammalian kidney, Kidney International, vol.72, issue.1, pp.19-25, 2007. ,
DOI : 10.1038/sj.ki.5002230
Cloning of a Novel Aldo-Keto Reductase Gene from Klebsiella sp. Strain F51-1-2 and Its Functional Expression in Escherichia coli, Applied and Environmental Microbiology, vol.73, issue.15, pp.4959-4965, 2007. ,
DOI : 10.1128/AEM.02993-06
Evidence for a human-specific Escherichia coli clone, Environmental Microbiology, vol.65, issue.4, pp.1000-1006, 2008. ,
DOI : 10.1111/j.1365-2958.2006.05172.x
The virulence plasmid pWR100 and the repertoire of proteins secreted by the type III secretion apparatus of Shigella flexneri, Molecular Microbiology, vol.11, issue.4, pp.760-771, 2000. ,
DOI : 10.1038/358167a0
The population genetics of ecological specialization in evolving Escherichia coli populations, Nature, vol.407, issue.6805, pp.736-745, 2000. ,
DOI : 10.1038/35037572
from the Phagolysosome: A Connection between Bacterial Dissemination and Neutrophil Transepithelial Signaling, The Journal of Infectious Diseases, vol.184, issue.6, pp.743-745, 2001. ,
DOI : 10.1086/323035
The Organization of the Bacterial Genome, Annual Review of Genetics, vol.42, issue.1, pp.211-233, 2008. ,
DOI : 10.1146/annurev.genet.42.110807.091653
Evolutionary dynamics of full genome content in Escherichia coli, The EMBO Journal, vol.19, issue.24, pp.6637-6643, 2000. ,
DOI : 10.1093/emboj/19.24.6637
Distribution of chromosome length variation in natural isolates of Escherichia coli, Molecular Biology and Evolution, vol.15, issue.1, pp.6-16, 1998. ,
DOI : 10.1093/oxfordjournals.molbev.a025847
Pathogenicity Islands: Bacterial Evolution in Quantum Leaps, Cell, vol.87, issue.5, pp.791-794, 1996. ,
DOI : 10.1016/S0092-8674(00)81985-6
Pathogenicity Islands and the Evolution of Microbes, Annual Review of Microbiology, vol.54, issue.1, pp.641-679, 2000. ,
DOI : 10.1146/annurev.micro.54.1.641
Mobile genetic elements: the agents of open source evolution, Nature Reviews Microbiology, vol.11, issue.9, pp.722-732, 2005. ,
DOI : 10.1093/nar/gkh059
Unequal access of chromosomal regions to each other in Salmonella: probing chromosome structure with phage ?? integrase-mediated long-range rearrangements, Molecular Microbiology, vol.257, issue.2, pp.329-344, 2004. ,
DOI : 10.1111/j.1365-2958.2004.03976.x
Pathogenic adaptation of Escherichia coli by natural variation of the FimH adhesin, Proceedings of the National Academy of Sciences, vol.95, issue.15, pp.8922-8926, 1998. ,
DOI : 10.1073/pnas.95.15.8922
Molecular evolution of the Escherichia coli chromosome. VI. Two regions of high effective recombination, Genetics, vol.163, pp.475-483, 2003. ,
Clonal analysis reveals high rate of structural mutations in fimbrial adhesins of extraintestinal pathogenic Escherichia coli, Molecular Microbiology, vol.165, issue.3, pp.975-988, 2006. ,
DOI : 10.1073/pnas.252529799
Role of Intraspecies Recombination in the Spread of Pathogenicity Islands within the Escherichia coli Species, PLoS Pathogens, vol.172, issue.1, 2008. ,
DOI : 10.1371/journal.ppat.1000257.s007
Evolutionary Implications of the Frequent Horizontal Transfer of Mismatch Repair Genes, Cell, vol.103, issue.5, pp.711-721, 2000. ,
DOI : 10.1016/S0092-8674(00)00175-6
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes, Science, vol.315, issue.5819, pp.1709-1712, 2007. ,
DOI : 10.1126/science.1138140
The coalescent process in models with selection, Genetics, vol.120, pp.819-829, 1988. ,
G+C3 Structuring Along the Genome: A Common Feature in Prokaryotes, Molecular Biology and Evolution, vol.20, issue.4, pp.471-483, 2003. ,
DOI : 10.1093/molbev/msg022
URL : https://hal.archives-ouvertes.fr/hal-00427485
Chromosomal location and evolutionary rate variation in enterobacterial genes, Science, vol.246, issue.4931, pp.808-810, 1989. ,
DOI : 10.1126/science.2683084
Effect of Chromosome Location on Bacterial Mutation Rates, Molecular Biology and Evolution, vol.19, issue.1, pp.85-92, 2002. ,
DOI : 10.1093/oxfordjournals.molbev.a003986
The effect of deleterious mutations on neutral molecular variation, Genetics, vol.134, pp.1289-1303, 1993. ,
The Temporal Dynamics of Slightly Deleterious Mutations in Escherichia coli and Shigella spp., Molecular Biology and Evolution, vol.26, issue.2, 2008. ,
DOI : 10.1093/molbev/msn252
GC-content evolution in mammalian genomes: the biased gene conversion hypothesis, Genetics, vol.159, pp.907-911, 2001. ,
URL : https://hal.archives-ouvertes.fr/hal-00427173
Similar compositional biases are caused by very different mutational effects, Genome Research, vol.16, issue.12, pp.1537-1547, 2006. ,
DOI : 10.1101/gr.5525106
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1665637
Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes, Molecular Microbiology, vol.52, issue.5, pp.1506-1518, 2006. ,
DOI : 10.1111/j.1365-2958.2006.05046.x
The impact of the neisserial DNA uptake sequences on genome evolution and stability, Genome Biology, vol.9, issue.3, p.60, 2008. ,
DOI : 10.1186/gb-2008-9-3-r60
URL : https://hal.archives-ouvertes.fr/pasteur-00336122
Macrodomain organization of the Escherichia coli chromosome, The EMBO Journal, vol.241, issue.21, pp.4330-4341, 2004. ,
DOI : 10.1038/sj.emboj.7600028
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome", Proceedings of the National Academy of Sciences, vol.102, issue.39, pp.13950-13955, 2005. ,
DOI : 10.1073/pnas.0506758102
The fate of laterally transferred genes: Life in the fast lane to adaptation or death, Genome Research, vol.16, issue.5, pp.636-643, 2006. ,
DOI : 10.1101/gr.4746406
Genetic flux over time in the Salmonella lineage, Genome Biology, vol.8, issue.6, p.100, 2007. ,
DOI : 10.1186/gb-2007-8-6-r100
Chronic Diarrhea, Hemorrhagic Colitis, and Hemolytic-Uremic Syndrome Associated with HEp-2 Adherent Escherichia coli in Adults Infected with Human Immunodeficiency Virus in Bangui, Central African Republic, Journal of Clinical Microbiology, vol.40, issue.8, pp.3086-3088, 2002. ,
DOI : 10.1128/JCM.40.8.3086-3088.2002
Identification of an Aggregative Adhesion Fimbria (AAF) Type III-Encoding Operon in Enteroaggregative Escherichia coli as a Sensitive Probe for Detecting the AAF-Encoding Operon Family, Infection and Immunity, vol.70, issue.8, pp.4302-4313, 2002. ,
DOI : 10.1128/IAI.70.8.4302-4311.2002
Clonal Group, New England Journal of Medicine, vol.345, issue.14, pp.1007-1013, 2001. ,
DOI : 10.1056/NEJMoa011265
Neonatal Meningitis Isolates: Identification of a New Virulent Clone, The Journal of Infectious Diseases, vol.187, issue.12, pp.1895-1906, 2003. ,
DOI : 10.1086/375347
Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens, J Clin Microbiol, vol.21, pp.77-81, 1985. ,
Enteropathogenicity and antimicrobial susceptibility of new Escherichia spp, J Diarrhoeal Dis Res, vol.17, pp.85-87, 1999. ,
Escherichia fergusonii: An emerging pathogen in South Orissa, Indian Journal of Medical Microbiology, vol.23, issue.3, p.204, 2005. ,
DOI : 10.4103/0255-0857.16598
Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles, PLoS ONE, vol.20, issue.3, p.1805, 2008. ,
DOI : 10.1371/journal.pone.0001805.s003
AMIGene: Annotation of MIcrobial Genes, Nucleic Acids Research, vol.31, issue.13, pp.3723-3726, 2003. ,
DOI : 10.1093/nar/gkg590
URL : https://hal.archives-ouvertes.fr/hal-00271511
MaGe: a microbial genome annotation system supported by synteny results, Nucleic Acids Research, vol.34, issue.1, pp.53-65, 2006. ,
DOI : 10.1093/nar/gkj406
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005, Nucleic Acids Research, vol.34, issue.1, pp.1-9, 2005. ,
DOI : 10.1093/nar/gkj405
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes, Nucleic Acids Research, vol.33, issue.Web Server, pp.471-479, 2005. ,
DOI : 10.1093/nar/gki498
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements, Genome Research, vol.14, issue.7, pp.1394-1403, 2004. ,
DOI : 10.1101/gr.2289704
MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level, BMC Bioinformatics, vol.9, issue.1, p.948, 2008. ,
DOI : 10.1186/1471-2105-9-498
URL : https://hal.archives-ouvertes.fr/hal-00489678
MAFFT version 5: improvement in accuracy of multiple sequence alignment, Nucleic Acids Research, vol.33, issue.2, pp.511-518, 2005. ,
DOI : 10.1093/nar/gki198
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing, Bioinformatics, vol.18, issue.3, pp.502-504, 2002. ,
DOI : 10.1093/bioinformatics/18.3.502
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data, Molecular Biology and Evolution, vol.14, issue.7, pp.685-695, 1997. ,
DOI : 10.1093/oxfordjournals.molbev.a025808
URL : https://hal.archives-ouvertes.fr/lirmm-00730410
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood, Systematic Biology, vol.52, issue.5, pp.696-704, 2003. ,
DOI : 10.1080/10635150390235520
PAML: a program package for phylogenetic analysis by maximum likelihood, Bioinformatics, vol.13, issue.5, pp.555-556, 1997. ,
DOI : 10.1093/bioinformatics/13.5.555
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference, Molecular Biology and Evolution, vol.16, issue.8, pp.1114-1116, 1999. ,
DOI : 10.1093/oxfordjournals.molbev.a026201
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea, Journal of Molecular Evolution, vol.46, issue.2, pp.170-179, 1989. ,
DOI : 10.1007/BF02100115
Likelihood-Based Tests of Topologies in Phylogenetics, Systematic Biology, vol.49, issue.4, pp.652-670, 2000. ,
DOI : 10.1080/106351500750049752
Inferring confidence sets of possibly misspecified gene trees, Proceedings of the Royal Society B: Biological Sciences, vol.269, issue.1487, pp.137-142, 2002. ,
DOI : 10.1098/rspb.2001.1862
Evolutionary trees from DNA sequences: A maximum likelihood approach, Journal of Molecular Evolution, vol.24, issue.6, pp.368-376, 1981. ,
DOI : 10.1007/BF01734359
Generating samples under a Wright-Fisher neutral model of genetic variation, Bioinformatics, vol.18, issue.2, pp.337-338, 2002. ,
DOI : 10.1093/bioinformatics/18.2.337
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees, Bioinformatics, vol.13, issue.3, pp.235-238, 1997. ,
DOI : 10.1093/bioinformatics/13.3.235
APE: Analyses of Phylogenetics and Evolution in R language, Bioinformatics, vol.20, issue.2, pp.289-290, 2004. ,
DOI : 10.1093/bioinformatics/btg412
Phylogenies and the Comparative Method, The American Naturalist, vol.125, issue.1, pp.1-15, 1985. ,
DOI : 10.1086/284325
Detecting Correlated Evolution on Phylogenies: A General Method for the Comparative Analysis of Discrete Characters, Proceedings of the Royal Society B: Biological Sciences, vol.255, issue.1342, pp.37-45, 1994. ,
DOI : 10.1098/rspb.1994.0006
The Complete Genome Sequence of Escherichia coli K-12, Science, vol.277, issue.5331, pp.1453-1461, 1997. ,
DOI : 10.1126/science.277.5331.1453
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery, Nucleic Acids Research, vol.33, issue.19, pp.6445-6458, 2005. ,
DOI : 10.1093/nar/gki954
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157, Nucleic Acids Research, vol.30, issue.20, pp.4432-4441, 2002. ,
DOI : 10.1093/nar/gkf566
Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T, Infection and Immunity, vol.71, issue.5, pp.2775-2786, 2003. ,
DOI : 10.1128/IAI.71.5.2775-2786.2003
Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a, BMC Genomics, vol.7, issue.1, p.173, 2006. ,
DOI : 10.1186/1471-2164-7-173
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7, Nature, vol.409, issue.6819, pp.529-533, 2001. ,
DOI : 10.1038/35054089
Complete Genome Sequence of Enterohemorrhagic Eschelichia coli O157:H7 and Genomic Comparison with a Laboratory Strain K-12, DNA Research, vol.8, issue.1, pp.11-22, 2001. ,
DOI : 10.1093/dnares/8.1.11
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach, Proceedings of the National Academy of Sciences, vol.103, issue.15, pp.5977-5982, 2006. ,
DOI : 10.1073/pnas.0600938103
The Genome Sequence of Avian Pathogenic Escherichia coli Strain O1:K1:H7 Shares Strong Similarities with Human Extraintestinal Pathogenic E. coli Genomes, Journal of Bacteriology, vol.189, issue.8, pp.3228-3236, 2007. ,
DOI : 10.1128/JB.01726-06
How to become a uropathogen: Comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains, Proceedings of the National Academy of Sciences, vol.103, issue.34, pp.12879-12884, 2006. ,
DOI : 10.1073/pnas.0603038103
GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins, Nucleic Acids Research, vol.32, issue.90001, pp.300-302, 2004. ,
DOI : 10.1093/nar/gkh087
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Genetics, vol.123, pp.585-595, 1989. ,
Determination of the Core of a Minimal Bacterial Gene Set, Microbiology and Molecular Biology Reviews, vol.68, issue.3, pp.518-537, 2004. ,
DOI : 10.1128/MMBR.68.3.518-537.2004