The genome of the sea urchin Strongylocentrotus purpuratus.

Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron 1 Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess 2 Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes 3, 4 William H Klein 5 William Marzluff David R Mcclay Robert L Morris 6 Arcady Mushegian Jonathan P Rast L Courtney Smith 7, 8, 9 Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang 10 Christine G Elsik 11 Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song 12, 13 Alexandre Souvorov Victor Solovyev 14 Zheng Wei Charles A Whittaker 15 Kim Worley K James Durbin Yufeng Shen 16, 17, 18 Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson 19 Aleksandar Milosavljevic Mark Tong 20 Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams 21, 22 Robert Bellé 23 Seth Carbonneau Rocky Cheung 24 Patrick Cormier 23 Bertrand Cosson 23 Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel 25 Hemant Kelkar Julia Morales 23 Odile Mulner-Lorillon 23 Anthony J Robertson 26, 27, 28 Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally 29 John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S Mccafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman 30 Andrew Leone 31 Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu 32 Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson 33 Elly Chow Qiu Autumn Yuan 34 Eran Elhaik Dan Graur Justin T Reese 11 Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen 35, 36 Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair 37 Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen 38 Allison M Churcher F. Hallböök Glen W Humphrey Mohammed M Idris 39 Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible 40 Matthew Rowe John S Taylor 41, 42, 43 Kristin Tessmar-Raible D. Wang 44, 45, 46 Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo 47 Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura 48 Michael Raisch Anna Reade Michelle M Roux 49, 50, 51 Jia L Song 52 Yi-Hsien Su 53, 54, 55 Ian K Townley Ekaterina Voronina Julian L Wong 56, 57 Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin 58, 59 Constantin Flytzanis 60 Christian Gache François Lapraz Thierry Lepage 61 Annamaria Locascio Pedro Martinez 62, 63, 64 Giorgio Matassi 65 Valeria Matranga Ryan Range Francesca Rizzo 66 Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda 67 Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu 68, 69, 70 Ronghui Xu C Titus Brown 71, 72, 73 Lili Chen 74, 75 Rachel F Gray Pei Yun Lee 76, 77 Jongmin Nam 78 Paola Oliveri Joel Smith 79, 80, 81 Donna Muzny Stephanie Bell 82, 83 Joseph Chacko Andrew Cree Stacey Curry Clay Davis 80, 84 Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez 85 Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee 86, 87, 88 Lora Lewis 89, 90 George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker 19, 91 Ling-Ling Pu Rachel Thorn Rita Wright 92, 93
35 ALCHEMY - Architectures, Languages and Compilers to Harness the End of Moore Years
LRI - Laboratoire de Recherche en Informatique, UP11 - Université Paris-Sud - Paris 11, Inria Saclay - Ile de France, CNRS - Centre National de la Recherche Scientifique : UMR8623
Abstract : We report the sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology. The sequencing strategy combined whole-genome shotgun and bacterial artificial chromosome (BAC) sequences. This use of BAC clones, aided by a pooling strategy, overcame difficulties associated with high heterozygosity of the genome. The genome encodes about 23,300 genes, including many previously thought to be vertebrate innovations or known only outside the deuterostomes. This echinoderm genome provides an evolutionary outgroup for the chordates and yields insights into the evolution of deuterostomes.
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https://hal.archives-ouvertes.fr/hal-00358487
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Erica Sodergren, George M Weinstock, Eric H Davidson, R Andrew Cameron, Richard A Gibbs, et al.. The genome of the sea urchin Strongylocentrotus purpuratus.. Science, American Association for the Advancement of Science, 2006, 314 (5801), pp.941-52. ⟨10.1126/science.1133609⟩. ⟨hal-00358487⟩

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