J. Champoux, DNA Topoisomerases: Structure, Function, and Mechanism, Annual Review of Biochemistry, vol.70, issue.1, pp.369-413, 2001.
DOI : 10.1146/annurev.biochem.70.1.369

K. Corbett and J. Berger, Structure, Molecular Mechanisms, and Evolutionary Relationships in DNA Topoisomerases, Annual Review of Biophysics and Biomolecular Structure, vol.33, issue.1, pp.95-118, 2004.
DOI : 10.1146/annurev.biophys.33.110502.140357

J. Wang, Cellular roles of DNA topoisomerases: a molecular perspective, Nature Reviews Molecular Cell Biology, vol.351, issue.6, pp.430-440, 2002.
DOI : 10.1038/nrm831

A. Schoeffler and J. Berger, DNA topoisomerases: harnessing and constraining energy to govern chromosome topology, Quarterly Reviews of Biophysics, vol.267, issue.01, pp.41-101, 2008.
DOI : 10.1093/nar/gki642

P. Forterre, DNA topoisomerase V: a new fold of mysterious origin, Trends in Biotechnology, vol.24, issue.6, pp.245-247, 2006.
DOI : 10.1016/j.tibtech.2006.04.006

URL : https://hal.archives-ouvertes.fr/hal-00101159

P. Forterre, S. Gribaldo, D. Gadelle, and M. Serre, Origin and evolution of DNA topoisomerases, Biochimie, vol.89, issue.4, pp.427-446, 2007.
DOI : 10.1016/j.biochi.2006.12.009

URL : https://hal.archives-ouvertes.fr/hal-00194416

D. Gadelle, J. Filee, C. Buhler, and P. Forterre, Phylogenomics of type II DNA topoisomerases, BioEssays, vol.98, issue.3, pp.232-242, 2003.
DOI : 10.1002/bies.10245

L. Aravind, D. Leipe, and E. Koonin, Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins, Nucleic Acids Research, vol.26, issue.18, pp.4205-4213, 1998.
DOI : 10.1093/nar/26.18.4205

C. Cheng, P. Kussie, N. Pavletich, and S. Shuman, Conservation of Structure and Mechanism between Eukaryotic Topoisomerase I and Site-Specific Recombinases, Cell, vol.92, issue.6, pp.841-850, 1998.
DOI : 10.1016/S0092-8674(00)81411-7

B. Taneja, A. Patel, A. Slesarev, and A. Mondragon, Structure of the N-terminal fragment of topoisomerase V reveals a new family of topoisomerases, The EMBO Journal, vol.13, issue.2, pp.398-408, 2006.
DOI : 10.1093/nar/25.15.3001

D. Benarroch, J. Claverie, D. Raoult, and S. Shuman, Characterization of Mimivirus DNA Topoisomerase IB Suggests Horizontal Gene Transfer between Eukaryal Viruses and Bacteria, Journal of Virology, vol.80, issue.1, pp.314-321, 2006.
DOI : 10.1128/JVI.80.1.314-321.2006

J. Champoux and R. Dulbecco, An Activity from Mammalian Cells That Untwists Superhelical DNA--A Possible Swivel For DNA Replication, Proceedings of the National Academy of Sciences, vol.69, issue.1, pp.143-146, 1972.
DOI : 10.1073/pnas.69.1.143

W. Garinther and M. Schultz, Topoisomerase function during replication-independent chromatin assembly in yeast., Molecular and Cellular Biology, vol.17, issue.7, pp.3520-3526, 1997.
DOI : 10.1128/MCB.17.7.3520

R. Kim and J. Wang, Function of DNA topoisomerases as replication swivels in Saccharomyces cerevisiae, Journal of Molecular Biology, vol.208, issue.2, pp.257-267, 1989.
DOI : 10.1016/0022-2836(89)90387-2

S. Brill, S. Dinardo, K. Voelkel-meiman, and R. Sternglanz, Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA, Nature, vol.326, issue.6111, pp.414-416, 1987.
DOI : 10.1038/326414a0

L. Liu, S. Desai, T. Li, Y. Mao, M. Sun et al., Mechanism of Action of Camptothecin, Annals of the New York Academy of Sciences, vol.803, issue.1, pp.1-10, 2000.
DOI : 10.1111/j.1749-6632.2000.tb07020.x

W. Bauer, E. Ressner, J. Kates, and J. Patzke, A DNA nicking-closing enzyme encapsidated in vaccinia virus: partial purification and properties., Proceedings of the National Academy of Sciences, vol.74, issue.5, pp.1841-1845, 1977.
DOI : 10.1073/pnas.74.5.1841

S. Shuman, Vaccinia virus DNA topoisomerase: a model eukaryotic type IB enzyme, Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, vol.1400, issue.1-3, pp.321-337, 1998.
DOI : 10.1016/S0167-4781(98)00144-4

B. Krogh and S. Shuman, Catalytic Mechanism of DNA Topoisomerase IB, Molecular Cell, vol.5, issue.6, pp.1035-1041, 2000.
DOI : 10.1016/S1097-2765(00)80268-3

L. Tian and S. Shuman, Vaccinia topoisomerase mutants illuminate roles for Phe59, Gly73, Gln69 and Phe215, Virology, vol.359, issue.2, pp.466-476, 2007.
DOI : 10.1016/j.virol.2006.08.056

N. Osheroff, Unraveling the Structure of the Variola Topoisomerase IB-DNA Complex: A Possible New Twist on Smallpox Therapy, Molecular Interventions, vol.6, issue.5, pp.245-248, 2006.
DOI : 10.1124/mi.6.5.4

B. Krogh and S. Shuman, A poxvirus-like type IB topoisomerase family in bacteria, Proceedings of the National Academy of Sciences, vol.99, issue.4, pp.1853-1858, 2002.
DOI : 10.1073/pnas.032613199

S. Hallam, K. Konstantinidis, N. Putnam, C. Schleper, Y. Watanabe et al., Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum, Proceedings of the National Academy of Sciences, vol.103, issue.48, pp.18296-18301, 2006.
DOI : 10.1073/pnas.0608549103

C. Brochier-armanet, B. Boussau, S. Gribaldo, and P. Forterre, Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota, Nature Reviews Microbiology, vol.52, issue.3, pp.245-252, 2008.
DOI : 10.1038/nrmicro1852

URL : https://hal.archives-ouvertes.fr/hal-00256781

M. Konneke, A. Bernhard, J. De-la-torre, C. Walker, J. Waterbury et al., Isolation of an autotrophic ammonia-oxidizing marine archaeon, Nature, vol.16, issue.7058, pp.543-546, 2005.
DOI : 10.1093/nar/gkh293

J. Venter, R. K. Heidelberg, J. Halpern, A. Rusch, D. Eisen et al., Environmental Genome Shotgun Sequencing of the Sargasso Sea, Science, vol.304, issue.5667, pp.66-74, 2004.
DOI : 10.1126/science.1093857

K. Makarova, A. Sorokin, P. Novichkov, Y. Wolf, and E. Koonin, Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea, Biology Direct, vol.2, issue.1, p.33, 2007.
DOI : 10.1186/1745-6150-2-33

M. Kwapisz, F. Beckouet, and P. Thuriaux, Early evolution of eukaryotic DNA-dependent RNA polymerases, Trends in Genetics, vol.24, issue.5, pp.211-215, 2008.
DOI : 10.1016/j.tig.2008.02.002

O. Lecompte, R. Ripp, J. Thierry, D. Moras, and O. Poch, Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale, Nucleic Acids Research, vol.30, issue.24, pp.5382-5390, 2002.
DOI : 10.1093/nar/gkf693

P. Forterre, Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain, Proceedings of the National Academy of Sciences, vol.103, issue.10, pp.3669-3674, 2006.
DOI : 10.1073/pnas.0510333103

URL : https://hal.archives-ouvertes.fr/hal-00022131