Application of formal methods to biological regulatory networks: extending Thomas??? asynchronous logical approach with temporal logic, Journal of Theoretical Biology, vol.229, issue.3, pp.339-347, 2004. ,
DOI : 10.1016/j.jtbi.2004.04.003
BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge, Bioinformatics, vol.22, issue.14, pp.1805-1807, 2006. ,
DOI : 10.1093/bioinformatics/btl172
URL : https://hal.archives-ouvertes.fr/hal-01431364
Brane calculi. interactions of biological membranes, Proc. Computational Methods in Systems Biology, pp.257-280, 2005. ,
DOI : 10.1007/978-3-540-25974-9_24
Fundamentals of Algebraic Graph Transformation (Monographs in Theoretical Computer Science. An EATCS Series), 2006. ,
Morphodynamics of the Secretory Pathway, International review of cytology, vol.242, pp.55-120, 2004. ,
DOI : 10.1016/S0074-7696(04)42002-6
-dimensional generalized maps, Proceedings of the fifth annual symposium on Computational geometry , SCG '89, pp.228-236, 1989. ,
DOI : 10.1145/73833.73859
URL : https://hal.archives-ouvertes.fr/hal-00909382
SYMBOLIC MODELING OF GENETIC REGULATORY NETWORKS, Journal of Bioinformatics and Computational Biology, vol.05, issue.02b, 2007. ,
DOI : 10.1142/S0219720007002850
URL : https://hal.archives-ouvertes.fr/hal-00293530
Topologybased geometric modelling for biological cellular processes, LATA'07, to appear in LNCS, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00348152
Dissection of COPI and Arf1 dynamics in vivo and role in Golgi membrane transport, Nature, vol.263, issue.6885, pp.187-193, 2002. ,
DOI : 10.1083/JCB.200107045
BioAmbients: an abstraction for biological compartments, Theoretical Computer Science, vol.325, issue.1, pp.141-167, 2004. ,
DOI : 10.1016/j.tcs.2004.03.061
URL : http://doi.org/10.1016/j.tcs.2004.03.061