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Verification of Biochemical Agent-Based Models Using Petri Nets

Abstract : Hsim is an agent-based simulator that allow the modelling of any kind of macro-molecules interactions in a 3D virtual cell using a description language. Theses models, which describe reactions between the various molecules are written by the user of the simulator. Our aim is to verify the validity of the user's model and to exhibit properties of these models without needing to run a simulation. To this end, we construct and analyse a Petri Net to determine all the possible macromolecular assemblies.
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Contributor : Frédéric Davesne <>
Submitted on : Thursday, November 20, 2008 - 11:59:05 PM
Last modification on : Wednesday, September 16, 2020 - 4:53:39 PM


  • HAL Id : hal-00340492, version 1



Thomas Moncion, Guillaume Hutzler, Patrick Amar. Verification of Biochemical Agent-Based Models Using Petri Nets. International Symposium on Agent Based Modeling and Simulation (ABModSim 2006), 2006, Vianna, Austria. pp.695--700. ⟨hal-00340492⟩



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