A. S. Ackerman, O. B. Toon, and P. V. Hobbs, A Model for Particle Microphysics, Turbulent Mixing, and Radiative Transfer in the Stratocumulus-Topped Marine Boundary Layer and Comparisons with Measurements, Journal of the Atmospheric Sciences, vol.52, issue.8, pp.1204-1236, 1995.
DOI : 10.1175/1520-0469(1995)052<1204:AMFPMT>2.0.CO;2

D. J. Allen, A. R. Douglass, R. , and R. B. , Application of a Monotonic Upstream-biased Transport Scheme to Three-Dimensional Constituent Transport Calculations, Monthly Weather Review, vol.119, issue.10, pp.2456-2464, 1991.
DOI : 10.1175/1520-0493(1991)119<2456:AOAMUB>2.0.CO;2

A. Arakawa, Computational design for long-term numerical integration of the equations of fluid motion: Two-dimensional incompressible flow. Part I, Journal of Computational Physics, vol.1, issue.1, pp.119-143, 1966.
DOI : 10.1016/0021-9991(66)90015-5

J. Arteta, S. Cautenet, M. Taghavi, and N. Audiffren, Impact of two chemistry mechanisms fully coupled with mesoscale model on the atmospheric pollutants distribution, Atmospheric Environment, vol.40, issue.40, pp.7983-8001, 2006.
DOI : 10.1016/j.atmosenv.2006.06.050

N. Audiffren, M. Renard, E. Buisson, C. , and N. , Deviations from the Henry's law equilibrium during cloud events: a numerical approach of the mass transfer between phases and its specific numerical effects, Atmospheric Research, vol.49, issue.2, pp.139-161, 1998.
DOI : 10.1016/S0169-8095(98)00072-6

M. C. Barth, A. L. Stuart, and W. C. Skamarock, Numerical simulations of the July 10 STERAO/Deep Convection storm: Redistribution of soluble tracers, J. Geophys. Res, vol.106, issue.12, pp.381-393, 2001.

M. C. Barth, P. G. Hess, and S. Madronich, Effect of marine boundary layer clouds on tropospheric chemistry as analyzed in a regional chemistry transport model, Journal of Geophysical Research: Atmospheres, vol.23, issue.D11, pp.412610-1029, 2002.
DOI : 10.1029/2001JD000468

M. C. Barth, S. Kim, W. C. Skamarock, A. L. Stuart, K. E. Pickering et al., Simulations of the redistribution of formaldehyde, formic acid, and peroxides in the, STERAO deep convection storm, pp.1331010-1029, 1996.

C. Barthe, G. Molinie, and J. Pinty, Description and first results of an explicit electrical scheme in a 3D cloud resolving model, Atmospheric Research, vol.76, issue.1-4, pp.95-113, 2005.
DOI : 10.1016/j.atmosres.2004.11.021

URL : https://hal.archives-ouvertes.fr/insu-00382076

C. Barthe, J. Pinty, M. , and C. , in an explicit electrical scheme tested in a Stratosphere-Troposphere Experiment: Radiation, Aerosols, and Ozone case study, Journal of Geophysical Research, vol.108, issue.D18, pp.10-1029, 2007.
DOI : 10.1029/2006JD007402

URL : https://hal.archives-ouvertes.fr/hal-00138144

A. Bott, A Positive Definite Advection Scheme Obtained by Nonlinear Renormalization of the Advective Fluxes, Monthly Weather Review, vol.117, issue.5, pp.1006-1015, 1989.
DOI : 10.1175/1520-0493(1989)117<1006:APDASO>2.0.CO;2

A. Bott, The Monotone Area-preserving Flux-Form Advection Algorithm: Reducing the Time-splitting Error in Two-Dimensional Flow Fields, Monthly Weather Review, vol.121, issue.9, pp.2637-2641, 1993.
DOI : 10.1175/1520-0493(1993)121<2637:TMAPFF>2.0.CO;2

T. L. Clark, A small-scale dynamic model using a terrain-following coordinate transformation, Journal of Computational Physics, vol.24, issue.2, pp.186-215, 1977.
DOI : 10.1016/0021-9991(77)90057-2

T. L. Clark, Numerical Simulations with a Three-Dimensional Cloud Model: Lateral Boundary Condition Experiments and Multicellular Severe Storm Simulations, Journal of the Atmospheric Sciences, vol.36, issue.11, pp.2191-2215, 1979.
DOI : 10.1175/1520-0469(1979)036<2191:NSWATD>2.0.CO;2

T. L. Clark and R. D. Farley, Severe Downslope Windstorm Calculations in Two and Three Spatial Dimensions Using Anelastic Interactive Grid Nesting: A Possible Mechanism for Gustiness, Journal of the Atmospheric Sciences, vol.41, issue.3, pp.329-350, 1984.
DOI : 10.1175/1520-0469(1984)041<0329:SDWCIT>2.0.CO;2

T. L. Clark and W. D. Hall, Multi-domain simulations of the time dependent navier-stokes equations: Benchmark error analysis of some nesting procedures, Journal of Computational Physics, vol.92, issue.2, pp.456-481, 1991.
DOI : 10.1016/0021-9991(91)90218-A

D. S. Cohan, M. G. Schultz, D. J. Jacob, B. G. Heikes, and D. R. Blake, Convective injection and photochemical decay of peroxides in the tropical upper troposphere: Methyl iodide as a tracer of marine convection, Journal of Geophysical Research: Atmospheres, vol.102, issue.D5, pp.5717-5724, 1999.
DOI : 10.1029/98JD01963

W. R. Cotton, P. Sr, R. A. Walko, R. L. Liston, G. E. Tremback et al., RAMS 2001: Current status and future directions, RAMS 2001: Current status and future directions, pp.5-29, 2003.
DOI : 10.1007/s00703-001-0584-9

J. W. Deardorff, The development of boundary layer turbulence models for use in studying the severe storm environment, Proceedings of the SESAME Opening Meeting, pp.251-264, 1975.

A. J. Decaria, K. E. Pickering, G. L. Stenchikov, J. R. Scala, J. L. Stith et al., in an individual thunderstorm during STERAO-A, Journal of Geophysical Research: Atmospheres, vol.103, issue.D9, pp.11-601, 2000.
DOI : 10.1029/2000JD900033

A. J. Decaria, K. E. Pickering, G. L. Stenchikov, and L. E. Ott, Lightning-generated NO x and its impact on tropospheric ozone production: A 3-D modeling study of a STERAO-A thunderstorm, J. Geophys. Res, pp.10-1029, 2005.

A. Ekman, C. Wang, J. Ström, W. , and J. , Explicit simulations of aerosol physics in a cloud-resolving model: a sensitivity study based on an observed convective cloud, Atmospheric Chemistry and Physics, vol.4, issue.3, pp.773-791, 2004.
DOI : 10.5194/acp-4-773-2004

URL : https://hal.archives-ouvertes.fr/hal-00295439

A. Ekman, C. Wang, J. Ström, and R. Krejci, Explicit Simulation of Aerosol Physics in a Cloud-Resolving Model: Aerosol Transport and Processing in the Free Troposphere, Journal of the Atmospheric Sciences, vol.63, issue.2, pp.682-696, 2006.
DOI : 10.1175/JAS3645.1

A. M. Fridlind, A. S. Ackerman, E. J. Jensen, A. J. Heymsfield, M. R. Poellot et al., Evidence for the Predominance of Mid-Tropospheric Aerosols as Subtropical Anvil Cloud Nuclei, Science, vol.304, issue.5671, pp.718-722, 2004.
DOI : 10.1126/science.1094947

Q. Fu and K. N. Liou, Parameterization of the Radiative Properties of Cirrus Clouds, Journal of the Atmospheric Sciences, vol.50, issue.13, pp.2008-2025, 1993.
DOI : 10.1175/1520-0469(1993)050<2008:POTRPO>2.0.CO;2

W. W. Grabowski, Sixth WMO International Cloud Modeling Workshop, Bulletin of the American Meteorological Society, vol.87, issue.5, pp.639-642, 2006.
DOI : 10.1175/BAMS-87-5-639

H. Jr, J. H. Farley, and R. D. , A numerical modeling study of a Montana thunderstorm, 2, Model results vs. observations involving electrical aspects, J. Geophys. Res, vol.92, pp.5661-5675, 1987.

H. Jr, J. H. Wu, G. Farley, and R. D. , An intracloud lightning parameterization scheme for a storm electrification model, J. Geophys. Res, vol.97, pp.5865-5884, 1992.

H. Jr, J. H. Wojcik, W. A. Farley, and R. D. , An examination of thunderstorm charging mechanisms using a two-dimensional storm electrification model, J. Geophys. Res, vol.106, pp.1165-1192, 2001.

H. Jr, J. H. Gattaleeradapan, S. Farley, R. D. Waits, and C. C. , An examination of the convective charging hypothesis: charge structure, electric fields, and Maxwell currents, J. Geophys . Res, vol.107, issue.4630, pp.10-1029, 2002.

A. C. Hindmarsh, ODEPACK, A systematized collection of ODE solvers, Scientific Computing, pp.55-64, 1983.

M. Z. Jacobson, Computation of global photochemistry with SMVGEAR II, Atmospheric Environment, vol.29, issue.18, pp.2541-2546, 1995.
DOI : 10.1016/1352-2310(95)00194-4

L. Jaeglé, D. J. Jacob, Y. Wang, A. J. Weinheimer, B. A. Ridley et al., in the upper troposphere over the United States, Geophysical Research Letters, vol.99, issue.10, pp.1705-1708, 1998.
DOI : 10.1029/97GL03591

E. J. Jensen, A. S. Ackerman, D. E. Stevens, O. B. Toon, and P. Minnis, Spreading and growth of contrails in a sheared environment, Journal of Geophysical Research: Atmospheres, vol.94, issue.D24, pp.31-557, 1998.
DOI : 10.1029/98JD02594

E. Kessler, On the distribution and continuity of water substance in atmospheric circulations, Meteorol. Monogr, vol.10, issue.32, 1969.

J. B. Klemp and R. B. Wilhelmson, The Simulation of Three-Dimensional Convective Storm Dynamics, Journal of the Atmospheric Sciences, vol.35, issue.6, pp.1070-1096, 1978.
DOI : 10.1175/1520-0469(1978)035<1070:TSOTDC>2.0.CO;2

J. B. Klemp and R. B. Wilhelmson, Simulations of Right- and Left-Moving Storms Produced Through Storm Splitting, Journal of the Atmospheric Sciences, vol.35, issue.6, pp.1097-1110, 1978.
DOI : 10.1175/1520-0469(1978)035<1097:SORALM>2.0.CO;2

J. Lafore, J. Stein, N. Asencio, P. Bougeault, V. Ducrocq et al., The Meso-NH Atmospheric Simulation System. Part I: adiabatic formulation and control simulations, Annales Geophysicae, vol.16, issue.1, pp.90-109, 1998.
DOI : 10.1007/s00585-997-0090-6

URL : https://hal.archives-ouvertes.fr/hal-00329074

M. Lawrence and P. J. Rasch, Tracer Transport in Deep Convective Updrafts: Plume Ensemble versus Bulk Formulations, Journal of the Atmospheric Sciences, vol.62, issue.8, pp.2880-2894, 2005.
DOI : 10.1175/JAS3505.1

M. Leriche, S. Cautenet, M. Barth, C. , N. Borrego et al., Modelling of the July 10 STERAO storm with the RAMS model: Chemical species redistribution including gas phase and aqueous phase chemistry, in: Air Pollution Modeling and Its Application XVIII The Netherlands, pp.433-442, 2007.

F. B. Lipps and R. S. Hemler, Numerical Simulation of Deep Tropical Convection Associated with Large-Scale Convergence, Journal of the Atmospheric Sciences, vol.43, issue.17, pp.1796-1816, 1986.
DOI : 10.1175/1520-0469(1986)043<1796:NSODTC>2.0.CO;2

Y. Lin, R. D. Farley, O. , and H. D. , Bulk Parameterization of the Snow Field in a Cloud Model, Journal of Climate and Applied Meteorology, vol.22, issue.6, pp.1065-1092, 1983.
DOI : 10.1175/1520-0450(1983)022<1065:BPOTSF>2.0.CO;2

S. Madronich, Photodissociation in the atmosphere: 1. Actinic flux and the effects of ground reflections and clouds, Journal of Geophysical Research, vol.59, issue.D8, pp.9740-9752, 1987.
DOI : 10.1029/JD092iD08p09740

S. Madronich and S. Flocke, The Role of Solar Radiation in Atmospheric Chemistry, pp.1-26, 1999.
DOI : 10.1007/978-3-540-69044-3_1

M. P. Meyers, R. L. Walko, J. Y. Harrington, and W. R. Cotton, New RAMS cloud microphysics parameterization. Part II: The two-moment scheme, Atmospheric Research, vol.45, issue.1, pp.3-39, 1997.
DOI : 10.1016/S0169-8095(97)00018-5

M. Ovtchinnikov and S. J. Ghan, Parallel simulations of aerosol influence on clouds using cloud-resolving and www.atmos-chem-phys, Atmos. Chem. Phys, vol.4709, issue.7, pp.4709-4731, 2007.

M. C. Barth, Cloud chemistry model intercomparison single-column models, J. Geophys. Res, pp.10-1029, 2005.

K. E. Pickering, Y. Wang, W. Tao, C. Price, and J. Müller, for use in regional and global chemical transport models, Journal of Geophysical Research: Atmospheres, vol.117, issue.D23, pp.31-203, 1998.
DOI : 10.1029/98JD02651

J. Pinty and P. Jabouille, A mixed-phase cloud parameterization for use in a mesoscale non-hydrostatic model: Simulations of a squall line and of orographic precipitation, Conf. On Cloud Physics, pp.217-220, 1998.

P. J. Popp, R. S. Gao, T. P. Marcy, D. W. Fahey, P. K. Hudson et al., Nitric acid uptake on subtropical cirrus cloud particles, Journal of Geophysical Research: Atmospheres, vol.24, issue.11, p.630210, 1029.
DOI : 10.1029/2003JD004255

C. Price and D. Rind, A simple lightning parameterization for calculating global lightning distributions, Journal of Geophysical Research: Atmospheres, vol.37, issue.D9, pp.9919-9933, 1992.
DOI : 10.1029/92JD00719

C. Price, J. Penner, and M. Prather, from lightning: 1. Global distribution based on lightning physics, Journal of Geophysical Research: Atmospheres, vol.79, issue.D5, pp.5929-5941, 1997.
DOI : 10.1029/96JD03504

B. A. Ridley, J. G. Walega, J. E. Dye, and F. E. Grahek, Distributions of NO, NO x , NO y , and O 3 to 12 km altitude during the summer monsoon season over New Mexico, J. Geophys. Res, vol.99, pp.25-519, 1994.

S. A. Rutledge, D. A. Hegg, and P. V. Hobbs, A numerical model for sulfur and nitrogen scavenging in narrow cold-frontal rainbands: 1. Model description and discussion of microphysical fields, Journal of Geophysical Research, vol.18, issue.D13, pp.385-399, 1986.
DOI : 10.1029/JD091iD13p14385

S. E. Schwartz and W. Jaeschke, Mass-Transport Considerations Pertinent to Aqueous Phase Reactions of Gases in Liquid-Water Clouds, Chemistry of Multiphase Atmospheric Systems, pp.415-471, 1986.
DOI : 10.1007/978-3-642-70627-1_16

J. H. Seinfeld, Atmospheric Chemistry and Physics of Air Pollution, 1986.

A. Seifert and M. Weisman, A comparison of bulk microphysical schemes for cloud resolving NWP, in: Proceedings of the 6th WRF/15th MM5 Users, 2005.

W. C. Skamarock, J. E. Dye, E. Defer, M. C. Barth, J. L. Stith et al., in a continental thunderstorm, Journal of Geophysical Research, vol.39, issue.D11, pp.4305-4315, 2003.
DOI : 10.1029/2002JD002163

P. K. Smolarkiewicz, A full multidimensional positive definite advection transport algorithm with small implicit diffusion, J. Comput . Phys, vol.65, pp.325-363, 1984.

P. K. Smolarkiewicz and T. L. Clark, The multidimensional positive definite advection transport algorithm: Further development and applications, Journal of Computational Physics, vol.67, issue.2, pp.394-439, 1986.
DOI : 10.1016/0021-9991(86)90270-6

P. K. Smolarkiewicz and W. W. Grabowski, The multidimensional positive definite advection transport algorithm: nonoscillatory option, Journal of Computational Physics, vol.86, issue.2, pp.355-375, 1990.
DOI : 10.1016/0021-9991(90)90105-A

J. A. Snow, B. G. Heikes, H. Shen, D. W. O-'sullivan, A. Fried et al., Hydrogen peroxide, methyl hydroperoxide, and formaldehyde over North America and the North Atlantic, Journal of Geophysical Research, vol.104, issue.D23, pp.12-0710, 2007.
DOI : 10.1029/2006JD007746

S. Soong and Y. Ogura, Response of Tradewind Cumuli to Large-Scale Processes, Journal of the Atmospheric Sciences, vol.37, issue.9, pp.2035-2050, 1980.
DOI : 10.1175/1520-0469(1980)037<2035:ROTCTL>2.0.CO;2

V. Spiridonov and M. Curic, A three-dimensional numerical simulation of sulfate transport and redistribution, Canadian Journal of Physics, vol.81, issue.9, pp.1067-1094, 2003.
DOI : 10.1139/p03-067

V. Spiridonov and M. Curic, The Relative Importance of Scavenging, Oxidation, and Ice-Phase Processes in the Production and Wet Deposition of Sulfate, Journal of the Atmospheric Sciences, vol.62, issue.7, pp.2118-2135, 2005.
DOI : 10.1175/JAS3466.1

G. Stenchikov, R. Dickerson, K. Pickering, W. Ellis, B. Doddridge et al., Stratosphere-troposphere exchange in a midlatitude mesoscale convective complex: 2. Numerical simulations, Journal of Geophysical Research: Atmospheres, vol.99, issue.D3, pp.6837-6851, 1996.
DOI : 10.1029/95JD02468

D. E. Stevens and C. S. Bretherton, A Forward-in-Time Advection Scheme and Adaptive Multilevel Flow Solver for Nearly Incompressible Atmospheric Flow, Journal of Computational Physics, vol.129, issue.2, pp.284-295, 1996.
DOI : 10.1006/jcph.1996.0250

A. Stickler, H. Fischer, J. Williams, M. De-reus, R. Sander et al., Influence of summertime deep convection on formaldehyde in the middle and upper troposphere over Europe, Journal of Geophysical Research, vol.101, issue.D3, pp.1430810-1029, 2006.
DOI : 10.1029/2005JD007001

M. Taghavi, S. Cautenet, and G. Foret, Simulation of ozone production in a complex circulation region using nested grids, Atmos . Chem. Phys, vol.4825, issue.4, pp.825-838, 2004.
URL : https://hal.archives-ouvertes.fr/hal-00327865

W. Tao and J. Simpson, Goddard Cumulus Ensemble Model. Part I: Model Description, Terrestrial, Atmospheric and Oceanic Sciences, vol.4, issue.1, pp.35-72, 1993.
DOI : 10.3319/TAO.1993.4.1.35(A)

W. Tao, J. Simpson, D. Baker, S. Braun, M. Chou et al., Microphysics, radiation and surface processes in the Goddard Cumulus Ensemble (GCE) model, Microphysics, radiation, and surface processes in the Goddard Cumulus Ensemble (GCE) model, pp.97-137, 2001.
DOI : 10.1007/s00703-001-0594-7

G. R. Taylor, Sulfate Production and Deposition in Midlatitude Continental Cumulus Clouds. Part II: Chemistry Model Formulation and Sensitivity Analysis, Journal of the Atmospheric Sciences, vol.46, issue.13, 1989.
DOI : 10.1175/1520-0469(1989)046<1991:SPADIM>2.0.CO;2

H. Tost, P. Jockel, and J. Lelieveld, Influence of different convection parameterizations in a GCM, Atmos. Chem. Phys, vol.65475, issue.6, pp.5475-5493, 2006.

G. J. Tripoli and W. R. Cotton, The Use of lce-Liquid Water Potential Temperature as a Thermodynamic Variable In Deep Atmospheric Models, Monthly Weather Review, vol.109, issue.5, pp.1094-1102, 1981.
DOI : 10.1175/1520-0493(1981)109<1094:TUOLLW>2.0.CO;2

G. J. Tripoli and W. R. Cotton, The Colorado State University three-dimensional cloud/mesoscale model ? 1982, Part II: An ice phase parameterization, J. Rech. Atmos, vol.16, pp.295-320, 1982.

C. Wang, A modeling study on the response of tropical deep convection to the increase of CCN concentration. 1. Dynamics and microphysics, J. Geophys. Res, vol.110, pp.10-1029, 2005.

C. Wang, A modeling study on the response of tropical deep convection to the increase of CCN concentration. 2. Radiation and chemistry, J. Geophys. Res, vol.110, pp.10-1029, 2005.

C. Wang and J. Chang, A three-dimensional numerical model of cloud dynamics, microphysics, and chemistry: 1. Concepts and formulation, Journal of Geophysical Research, vol.39, issue.3, pp.14-827, 1993.
DOI : 10.1029/92JD01393

C. Wang and J. Chang, A three-dimensional numerical model of cloud dynamics, microphysics, and chemistry: 3. Redistribution of pollutants, Journal of Geophysical Research, vol.98, issue.D9, pp.787-803, 1993.
DOI : 10.1029/93JD01865

C. Wang and J. Chang, A three-dimensional numerical model of cloud dynamics, microphysics, and chemistry: 4. Cloud chemistry and precipitation chemistry, Journal of Geophysical Research, vol.98, issue.D9, pp.98-799, 1993.
DOI : 10.1029/93JD01573

C. Wang and P. J. Crutzen, Impact of a simulated severe local storm on the redistribution of sulfur dioxide, Journal of Geophysical Research, vol.93, issue.8, pp.357-368, 1995.
DOI : 10.1029/95JD00697

C. Wang and R. Prinn, On the roles of deep convective clouds in tropospheric chemistry, Journal of Geophysical Research: Atmospheres, vol.24, issue.11, pp.269-291, 2000.
DOI : 10.1029/2000JD900263

C. Wang, R. G. Prinn, and A. Sokolov, A global interactive chemistry and climate model: Formulation and testing, Journal of Geophysical Research: Atmospheres, vol.44, issue.7, pp.3399-3418, 1998.
DOI : 10.1029/97JD03465

Y. Wang, A. W. Dedilva, G. C. Goldenbaum, and R. R. Dickerson, Nitric oxide production by simulated lightning: Dependence on current, energy, and pressure, Journal of Geophysical Research: Atmospheres, vol.29, issue.D15, pp.149-168, 1998.
DOI : 10.1029/98JD01356

L. J. Wicker and W. C. Skamarock, Time-Splitting Methods for Elastic Models Using Forward Time Schemes, Monthly Weather Review, vol.130, issue.8, pp.2088-2097, 2002.
DOI : 10.1175/1520-0493(2002)130<2088:TSMFEM>2.0.CO;2

S. Xie, K. Xu, R. T. Cederwall, P. Bechtold, A. D. Genio et al., Intercomparison and evaluation of cumulus parametrizations under summertime midlatitude continental conditions, Quarterly Journal of the Royal Meteorological Society, vol.129, issue.582, pp.1095-1135, 2002.
DOI : 10.1256/003590002320373229

X. Zhang, H. Jr, J. H. Farley, and R. D. , Numerical modeling of lightning-produced NO x using an explicit lightning scheme: 2. Three-dimensional simulation and expanded chemistry, J. Geophys. Res, vol.108, issue.4580, pp.10-1029, 2003.