A New Distance for High Level RNA Secondary Structure Comparison, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.2, issue.1, pp.3-14, 2005. ,
DOI : 10.1109/TCBB.2005.2
URL : https://hal.archives-ouvertes.fr/hal-00306658
RNA sequences and the edit(nested,nested) problem, 2003. ,
The ribonuclease p database, Nucleic Acids Research, vol.24, issue.1, p.314, 1999. ,
The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs, BMC Bioinformatics, vol.3, issue.1, 2002. ,
Finding Common Subsequences with Arcs and Pseudoknots, Proceedings of the 10th Annual Symposium on Combinatorial Pattern Matching (CPM'99), number 1645 in LNCS, pp.270-280, 1999. ,
DOI : 10.1007/3-540-48452-3_20
Phylip (phylogeny inference package) version 3.6. distributed by the author, 2005. ,
Hierarchical graph search for mobile robot path planning, Proceedings. 1998 IEEE International Conference on Robotics and Automation (Cat. No.98CH36146), pp.656-661, 1998. ,
DOI : 10.1109/ROBOT.1998.677047
Multihierarchical graph search, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.24, issue.1, pp.103-113, 2002. ,
DOI : 10.1109/34.982887
An Edit Distance between Quotiented Trees, Algorithmica, vol.36, issue.1, pp.1-39, 2003. ,
DOI : 10.1007/s00453-002-1002-5
URL : https://hal.archives-ouvertes.fr/hal-00307409
Statistics of RNA secondary structures, Biopolymers, vol.258, issue.9, pp.1389-1404, 1993. ,
DOI : 10.1002/bip.360330909
Improving Efficiency in Mobile Robot Task Planning Through World Abstraction, IEEE Transactions on Robotics, vol.20, issue.4, pp.677-690, 2004. ,
DOI : 10.1109/TRO.2004.829480
Abstract shapes of RNA, Nucleic Acids Research, vol.32, issue.16, pp.4843-4851, 2004. ,
DOI : 10.1093/nar/gkh779
A Multiscale Model of Plant Topological Structures, Journal of Theoretical Biology, vol.191, issue.1, pp.1-46, 1998. ,
DOI : 10.1006/jtbi.1997.0561
URL : https://hal.archives-ouvertes.fr/hal-00827484
QuickTree: building huge Neighbour-Joining trees of protein sequences, Bioinformatics, vol.18, issue.11, pp.1546-1547, 2002. ,
DOI : 10.1093/bioinformatics/18.11.1546
Local similarity in RNA secondary structures, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003, p.159, 2003. ,
DOI : 10.1109/CSB.2003.1227315
Alignment of trees -an alternative to tree edit, Proceedings of the 5th Annual Symposium on Combinatorial Pattern Matching, pp.75-86, 1994. ,
Computing the Edit-Distance Between Unrooted Ordered Trees, Proceedings of the 6th Annual European Symposium on Algorithms, pp.91-102, 1998. ,
DOI : 10.1007/3-540-68530-8_8
Edit distance between two RNA structures, Proceedings of the fifth annual international conference on Computational biology , RECOMB '01, pp.211-220, 2001. ,
DOI : 10.1145/369133.369214
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.32.7919
Local similarity between quotiented ordered trees, Journal of Discrete Algorithms, vol.5, issue.1, 2006. ,
DOI : 10.1016/j.jda.2006.03.010
URL : https://hal.archives-ouvertes.fr/hal-00307119
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction, Bioinformatics, vol.21, issue.17, pp.3516-3523, 2005. ,
DOI : 10.1093/bioinformatics/bti577
Formalizing Regions in the Spatial Semantic Hierarchy: an AH-Graphs implementation approach, Lecture Notes in Computer Science, vol.1661, pp.109-124, 1999. ,
DOI : 10.1007/3-540-48384-5_8
An algorithm for comparing multiple RNA secondary structures, Bioinformatics, vol.4, issue.3, pp.387-393, 1988. ,
DOI : 10.1093/bioinformatics/4.3.387
The Tree-to-Tree Correction Problem, Journal of the ACM, vol.26, issue.3, pp.422-433, 1979. ,
DOI : 10.1145/322139.322143
Pattern Matching Problems over 2-Interval Sets, Proceedings of the 13th Annual Symposium on Combinatorial Pattern Matching, pp.53-63, 2002. ,
DOI : 10.1007/3-540-45452-7_6
Simple Fast Algorithms for the Editing Distance between Trees and Related Problems, SIAM Journal on Computing, vol.18, issue.6, pp.1245-1262, 1989. ,
DOI : 10.1137/0218082
RNA secondary structures and their prediction, Bulletin of Mathematical Biology, vol.9, issue.Suppl. 2, pp.591-621, 1984. ,
DOI : 10.1007/BF02459506