A molecular timescale of eukaryote evolution and the rise of complex multicellular life, BMC Evol Biol, vol.4, issue.2, 2004. ,
The magnitude of fungal diversity: the 1.5 million species revisited, Mycol Res, vol.105, pp.1422-1432, 2001. ,
Saprobic soil fungi, Biodiversity of the Fungi, Biodiversity and Monitoring Methods Edited by: Mueller GM, pp.271-302, 2004. ,
Ecologie des Champignons Paris: Masson, 1993. ,
The Triumph of Fungi: a Rotten History Oxford: Oxford University press, 2007. ,
Wood-rotting fungi of north america, Mycologia, vol.72, pp.1-49, 1980. ,
, HarperCollins Publishers; 2005. 8. Carbon Dioxide Information Analysis Center
Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution, Trends Genet, vol.22, pp.375-387, 2006. ,
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization, Science, vol.317, pp.1400-1402, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00192479
The genome sequence of the rice blast fungus Magnaporthe grisea, Nature, vol.434, pp.980-986, 2005. ,
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis, Nature, vol.444, pp.97-101, 2006. ,
, The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans, vol.307, pp.1321-1324, 2005.
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus, Nature, vol.438, pp.1151-1156, 2005. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02639869
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78, Nat Biotechnol, vol.22, pp.695-700, 2004. ,
The genome sequence of the filamentous fungus Neurospora crassa, Nature, vol.422, pp.859-868, 2003. ,
The genome sequence of Schizosaccharomyces pombe, Nature, vol.415, pp.871-880, 2002. ,
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae, Nature, vol.438, pp.1105-1115, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02683270
Genome sequencing and analysis of Aspergillus oryzae, Nature, vol.438, pp.1157-1161, 2005. ,
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513, Nat Biotechnol, vol.88, pp.221-231, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-02668442
The sexuality of the normal, giant and dwarf spores of Pleurage anserina. (Ces) Kuntze, Ann Bot, vol.45, pp.1-14, 1931. ,
Sur l'analyse génétique des asques du Podospora anserina, C R Acad Sci, vol.212, pp.59-61, 1941. ,
Characterization of hch, the Podospora anserina homolog of the het-c heterokaryon incompatibility gene of Neurospora crassa, Curr Genet, vol.38, pp.39-47, 2000. ,
Characterization of the genomic organization of the region bordering the centromere of chromosome V of Podospora anserina by direct sequencing, Fungal Genet Biol, vol.39, pp.250-263, 2003. ,
, Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype, vol.431, pp.946-957, 2004.
URL : https://hal.archives-ouvertes.fr/hal-00427605
The origin and evolution of model organisms, Nat Rev Genet, vol.3, pp.838-849, 2002. ,
A molecular timescale for vertebrate evolution, Nature, vol.392, pp.917-920, 1998. ,
Assignment of linkage groups to the electrophoretically-separated chromosomes of the fungus Podospora anserina, Curr Genet, vol.24, pp.219-222, 1993. ,
Electrophoretic karyotype of the ascomycete Podospora anserina, Curr Genet, vol.18, pp.481-483, 1990. ,
, Two new fungal inteins. Yeast, vol.22, pp.493-501, 2005.
,
, The MIPS Neurospora crassa database (MNCDB)
Peptides encoded by short ORFs control development and define a new eukaryotic gene family, PLoS Biol, vol.5, p.106, 2007. ,
Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA, Nat Cell Biol, vol.9, pp.660-665, 2007. ,
A role for noncoding transcription in activation of the yeast PHO5 gene, Proc Natl Acad Sci, vol.104, pp.8011-8016, 2007. ,
Comparative analysis of 87,000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides, Fungal Genet Biol, vol.42, pp.848-861, 2005. ,
A large-scale full-length cDNA analysis to explore the budding yeast transcriptome, Proc Natl Acad Sci, vol.103, pp.17846-17851, 2006. ,
Genome-wide transcription and the implications for genomic organization, Nat Rev Genet, vol.8, pp.413-423, 2007. ,
Genetics of ribosomes and translational accuracy in Podospora anserina, Genetics of Translation: New Approaches Edited by: Tuite M, Picard M, Bolotin-Fukuhara M ,
Propagation of a novel cytoplasmic, infectious and deleterious determinant is controlled by translational accuracy in Podospora anserina, Genetics, vol.151, pp.87-95, 1999. ,
Cytosolic ribosomal mutations that abolish accumulation of circular intron in the mitochondria without preventing senescence of Podospora anserina, Genetics, vol.145, pp.697-705, 1997. ,
eEF1A Controls ascospore differentiation through elevated accuracy, but controls longevity and fruiting body formation through another mechanism in Podospora anserina, Genetics, vol.158, pp.1477-1489, 2001. ,
Selenoprotein synthesis: UGA does not end the story, Biochimie, vol.88, pp.1561-1571, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00120088
Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages, PLoS Genet, vol.2, p.32, 2006. ,
Prevalence of small inversions in yeast gene order evolution, Proc Natl Acad Sci, vol.97, pp.14433-14437, 2000. ,
Lengths of chromosomal segments conserved since divergence of man and mouse, Proc Natl Acad Sci, vol.81, pp.814-818, 1984. ,
,
Genome evolution in yeasts, Nature, vol.430, pp.35-44, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-00104411
Meiotic silencing by unpaired DNA, Cell, vol.107, pp.905-916, 2001. ,
URL : https://hal.archives-ouvertes.fr/hal-00109683
Evidence for nonrandom spatial distribution of meiotic exchanges in Podospora anserina : comparison between linkage groups 1 and 6, Mol Gen Genet, vol.176, pp.67-79, 1979. ,
Suppressed recombination and a pairing anomaly on the mating-type chromosome of Neurospora tetrasperma, Genetics, vol.154, pp.623-633, 2000. ,
Convergent evolution of chromosomal sex-determining regions in the animal and fungal kingdoms, PLOS Biol, vol.2, p.384, 2004. ,
Genome organization in Fusarium oxysporum : clusters of class II transposons, Curr Genet, vol.37, pp.339-347, 2000. ,
RIP: the evolutionary cost of genome defense, Trends Genet, vol.20, pp.417-423, 2004. ,
Genome quality control: RIP (repeat-induced point mutation) comes to Podospora, Mol Microbiol, vol.40, pp.586-595, 2001. ,
Altering a gene involved in nuclear distribution increases the repeat-induced point mutation process in the fungus Podospora anserina, Genetics, vol.167, pp.151-159, 2004. ,
Quelling: post-transcriptional gene silencing guided by small RNAs in Neurospora crassa, Curr Opin Microbiol, vol.10, pp.199-203, 2007. ,
Cloning gene ura5 for the orotidylic acid pyrophosphorylase of the filamentous fungus Podospora anserina : transformation of protoplasts, Gene, vol.32, pp.487-492, 1984. ,
dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora, EMBO J, vol.20, pp.4309-4323, 2001. ,
A cytosine methyltransferase homologue is essential for repeatinduced point mutation in Neurospora crassa, Proc Natl Acad Sci, vol.99, pp.8802-8807, 2002. ,
HP1 is essential for DNA methylation in Neurospora, Mol Cell, vol.13, pp.427-434, 2004. ,
Contribution à l'étude génétique d'un Ascomycète tétrasporé : Podospora anserina (Ces.), Rehm. Rev Cytol Biol Veg, vol.11, pp.201-304, 1949. ,
Genetically determined nonselective abortion of asci in Neurospora crassa, Can J Botany, vol.65, pp.1539-1549, 1987. ,
Identification of PaPKS1, a polyketide synthase involved in melanin formation and its utilization as a genetic tool in Podospora anserina ,
, Mycol Res, vol.111, pp.901-908, 2007.
PaTrx1 and PaTrx3, two cytosolic thioredoxins of the filamentous ascomycete Podospora anserina involved in sexual development and cell degeneration, Eukaryot Cell, vol.6, pp.2323-2331, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00204594
Genesis of a fungal non-self recognition repertoire, PLoS ONE, vol.2, p.283, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00131937
Natural history and evolutionary principles of gene duplication in fungi, Nature, vol.449, pp.54-61, 2007. ,
, Coprophilous fungi, vol.54, pp.161-180, 1970.
Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin, Int Microbiol, vol.8, pp.195-204, 2005. ,
Oxidative mechanisms involved in lignin degradation by white-rot fungi, Chem Rev, vol.101, pp.3397-3413, 2001. ,
White-rot fungi and their enzymes for the treatment of industrial dye effluents ,
, Biotechnol Adv, vol.22, pp.161-187, 2003.
A newly defined family of homologous proteins with diverse catalytic activities, J Mol Biol, vol.223, pp.811-814, 1992. ,
Production of wood-decay enzymes, mass loss and lignin solubilization in wood by tropical Xylariaceae, Mycol Res, vol.107, pp.231-235, 2003. ,
, CAZy~Carbohydrate-Active enZymes
Isolation and characterization of a diferuloyl arabinoxylan hexasaccharide from bamboo shoot cell-walls, Carbohydr Res, vol.219, pp.15-22, 1991. ,
T: Ester linkages between lignin and glucuronic acid in lignin-carbohydrate complexes from Fagus crenata, Phytochem, vol.37, pp.1165-1173, 1994. ,
, Silar P: Peroxide accumulation and cell death in filamentous fungi inudced by contact with a contestant, Mycol Res, vol.109, pp.137-149, 2005.
, Gene deletion and allelic replacement in the filamentous fungus Podospora anserina, vol.53, pp.249-258, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00259239
Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining, Proc Natl Acad Sci, vol.101, pp.12248-12253, 2004. ,
Les phénomènes de barrage chez Podospora anserina. I. Analyse génétique des barrages entre souches S and s, Podospora anserina Genome Project, vol.13, pp.51-92, 1952. ,
Mitochondrial DNA from Podospora anserina. I. Isolation and characterization, Mol Gen Genet, vol.171, pp.229-238, 1979. ,
Cloning plant genes by complementation of yeast mutants, Methods Cell Biol, vol.49, pp.417-430, 1995. ,
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction, Anal Biochem, vol.162, pp.156-159, 1987. ,
Whole-genome sequence assembly for mammalian genomes: Arachne 2 ,
, Genome Res, vol.13, pp.91-96, 2003.
Genetic Map of Podospora anserina, Genetic Maps 6th edition ,
Artemis: sequence visualization and annotation, Bioinformatics, vol.16, pp.944-945, 2000. ,
, Genome Res, vol.10, pp.511-515, 2000.
Isolation of telomeric DNA from the filamentous fungus Podospora anserina and construction of a self-replicating linear plasmid showing high transformation frequency, Nucleic Acids Res, vol.21, pp.497-504, 1993. ,
Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm, Proc Natl Acad Sci, vol.102, pp.5084-5089, 2005. ,
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence, Nucleic Acids Res, vol.25, pp.955-964, 1997. ,
Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles, J Mol Biol, vol.313, pp.1003-1011, 2001. ,
Basic local alignment search tool, J Mol Biol, vol.215, pp.403-410, 1990. ,
YASS: enhancing the sensitivity of DNA similarity search, Nucleic Acids Res, vol.33, pp.540-543, 2005. ,
URL : https://hal.archives-ouvertes.fr/inria-00100004
Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res, vol.33, pp.121-124, 2005. ,
Noncoding RNAs database (ncRNAdb), Nucleic Acids Res, vol.35, pp.162-164, 2007. ,
EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA, Comput Appl Biosci, vol.13, pp.477-478, 1997. ,
, , 2008.
, Genome Biology, vol.9, issue.5, 2008.
, Genome Biology, vol.9, p.77, 2008.
Whole genome sequence comparisons and 'full-length' cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation, Genome Res, vol.14, pp.406-413, 2004. ,
W: Numerous novel annotations of the human genome sequence supported by a 5'-endenriched cDNA collection, Genome Res, vol.14, pp.463-471, 2004. ,
ASEtrap: a biological method for speeding up the exploration of spliceomes ,
URL : https://hal.archives-ouvertes.fr/hal-02502980
, Genome Res, vol.16, pp.776-786, 2006.
The thiobacilli, Bacteriol Rev, vol.21, pp.195-213, 1957. ,
ProbCons: probabilistic consistency-based multiple sequence alignment ,
, Genome Res, vol.15, pp.330-340, 2005.
Simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood, Syst Biol, vol.52, pp.696-704, 2003. ,
Sur l'impossibilité d'obtenir la multiplication végétative ininterrompue et illimitée de l'Ascomycète Podospora anserina, C R Acad Sci, vol.237, pp.838-840, 1953. ,
Deletion of putative apoptosis factors leads to lifespan extension in the fungal ageing model Podospora anserina, Mol Microbiol, vol.65, pp.948-958, 2007. ,
A: A mutation in the gene encoding cytochrome c1 leads to a decreased ROS content and to a long-lived phenotype in the filamentous fungus Podospora anserina, Fungal Genet Biol, vol.44, pp.648-658, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00167427
Silar P: A mitotically inheritable unit containing a MAP kinase module, Proc Natl Acad Sci, vol.103, pp.13445-13450, 2006. ,
DNA-binding specificity of the IDI-4 basic leucine zipper factor of Podospora anserina defined by systematic evolution of ligands by exponential enrichment (SELEX), Eukaryot Cell, vol.4, pp.476-483, 2005. ,
Cloning the mating types of the heterothallic fungus Podospora anserina : developmental features of haploid transformants carrying both mating types, Genetics, vol.128, pp.539-547, 1991. ,
The function of the coding sequences for the putative pheromone precursors in Podospora anserina is restricted to fertilization, Eukaryot Cell, vol.4, pp.407-420, 2005. ,
Rôle des facteurs internes et externes dans la manifestation de rythmes de croissance chez l'ascomycète Podospora anserina, C R Acad Sci, vol.254, pp.2646-2648, 1962. ,
IDC1, a Pezizomycotina-specific gene that belongs to the PaMpk1 MAP kinase transduction cascade of the filamentous fungus Podospora anserina, Fungal Genet Biol, vol.44, pp.1219-1230, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00195202
Sur la localisation du gène S et sur quelques particularités du crossing-over chez Podospora anserina, C R Acad Sci, vol.236, pp.2330-2332, 1953. ,
Mode d'action des gènes responsables de l'avortement de certains produits de la méiose chez l'Ascomycète Podospora anserina, C R Acad Sci, vol.264, pp.2300-2303, 1967. ,
Genetic evidence for a polycistronic unit of transcription in the complex locus '14' in Podospora anserina. II. Genetic analysis of informational suppressors, Genet Res Camb, vol.21, pp.1-15, 1973. ,
Podospora anserina AS6 gene encodes the cytosolic ribosomal protein of the E. coli S12 family, Fung Genet Newslett, vol.53, pp.26-29, 2006. ,
Inhibitors of mitochondrial function prevent senescence in the ascomycete Podospora anserina, Molec gen Genet, vol.153, pp.111-113, 1977. ,
Four mitochondrial loci in Podospora anserina, Neurospora Newsl, vol.25, pp.26-27, 1978. ,
A nonmammalian homolog of the PAF1 gene (Zellweger syndrome) discovered as a gene involved in caryogamy in the fungus Podospora anserina, Cell, vol.81, pp.1043-1051, 1995. ,
The peroxisomal import proteins PEX2, PEX5 and PEX7 are differently involved in Podospora anserina sexual cycle, Mol Microbiol, vol.62, pp.157-169, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00100342
Sur la nature de la différence cytoplasmique entre souches s and sS de Podospora anserina, C R Acad Sci, vol.248, pp.1394-1397, 1959. ,
The protein product of the het-s heterokaryon incompatibility gene of the fungus Podospora anserina behaves as a prion analog, Proc Natl Acad Sci, vol.94, pp.9773-9778, 1997. ,
URL : https://hal.archives-ouvertes.fr/hal-02378771
Discovery of a novel superfamily of type III polyketide synthases in Aspergillus oryzae, Biochem Biophys Res Commun, vol.331, pp.253-260, 2005. ,
Aryl-alcohol oxidase protein sequence: a comparison with glucose oxidase and other FAD oxidoreductases, Biochim Biophys Acta, vol.1481, pp.202-208, 2000. ,
Cellobiose dehydrogenase -a flavocytochrome from wood-degrading, phytopathogenic and saprotropic fungi, Curr Protein Pept Sci, vol.7, pp.255-280, 2006. ,
Fungal pyranose oxidases: occurrence, properties and biotechnical applications in carbohydrate chemistry ,
, Appl Microbiol Biotechnol, vol.54, pp.727-740, 2000.
, Adv Protein Chem, vol.60, pp.1-49, 2002.
Structure, organization, and transcriptional regulation of a family of copper radical oxidase genes in the lignin-degrading basidiomycete Phanerochaete chrysosporium, Appl Environ Microbiol, vol.72, pp.4871-4877, 2006. ,
An NADH:quinone oxidoreductase active during biodegradation by the brown-rot basidiomycete Gloeophyllum trabeum, Appl Environ Microbiol, vol.68, pp.2699-2703, 2002. ,
Fungal laccases -occurrence and properties, FEMS Microbiol Rev, vol.30, pp.215-242, 2006. ,
A new versatile peroxidase from Pleurotus, Biochem Soc Trans, vol.29, pp.116-122, 2001. ,
A gene essential for de novo methylation and development in Ascobolus reveals a novel type of eukaryotic DNA methyltransferase structure, Cell, vol.91, pp.281-290, 1997. ,
A histone H3 methyltransferase controls DNA methylation in Neurospora crassa, Nature, vol.414, pp.277-283, 2001. ,
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase, Nature, vol.416, pp.556-560, 2002. ,
An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation, EMBO J, vol.21, pp.6842-6852, 2002. ,
Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase, Nature, vol.399, pp.166-169, 1999. ,
Gene silencing in worms and fungi, Nature, vol.404, p.245, 2000. ,
Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase, Science, vol.286, pp.2342-2344, 1999. ,
Redundancy of the two dicer genes in transgeneinduced posttranscriptional gene silencing in Neurospora crassa, Mol Cell Biol, vol.24, pp.2536-2545, 2004. ,
QIP, a putative exonuclease, interacts with the Neurospora Argonaute protein and facilitates conversion of duplex siRNA into single strands, Genes Dev, vol.21, pp.590-600, 2007. ,
SAD-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of SAD-1 RNA-directed RNA polymerase, Proc Natl Acad Sci, vol.103, pp.2243-2248, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00109683
Masc2, a gene from Ascobolus encoding a protein with a DNA-methyltransferase activity in vitro, is dispensable for in vivo methylation, Mol Microbiol, vol.31, pp.331-338, 1999. ,
Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis, Nat Genet, vol.34, pp.65-69, 2003. ,
The Dnmt1 DNA-(cytosine-C5)-methyltransferase methylates DNA processively with high preference for hemimethylated target sites, J Biol Chem, vol.279, pp.48350-48359, 2004. ,
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene, Genes Dev, vol.15, pp.1753-1758, 2001. ,
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation, Science, vol.292, pp.2077-2080, 2001. ,
Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing, Curr Biol, vol.12, pp.1138-1144, 2002. ,
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development, Cell, vol.99, pp.247-257, 1999. ,
HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA, EMBO J, vol.21, pp.6832-6841, 2002. ,
Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance, Genes Dev, vol.20, pp.1283-1293, 2006. ,
A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance, Mol Cell, vol.13, pp.599-609, 2004. ,
Isolation and characterization of conditional alleles of the yeast SIR2 gene, J Mol Biol, vol.367, pp.1246-1257, 2007. ,
Maintenance of genomic methylation requires a SWI2/SNF2-like protein, Nat Genet, vol.22, pp.94-97, 1999. ,
Role of transposable elements in heterochromatin and epigenetic control, Nature, vol.430, pp.471-476, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-02677166