K. Muriki, K. D. Underwood, R. Sass, and . Rc-blast, RC-BLAST: Towards a Portable, Cost-Effective Open Source Hardware Implementation, 19th IEEE International Parallel and Distributed Processing Symposium, 2005.
DOI : 10.1109/IPDPS.2005.373
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.73.8599

D. A. Benson, I. Karsch-mizrachi, D. J. Lipman, J. Ostell, D. L. Wheeler et al., GenBank, Nucleic Acids Research, vol.33, issue.Database issue, pp.34-42, 2005.
DOI : 10.1093/nar/gki063
URL : http://doi.org/10.1093/nar/gki063

J. Lancaster, J. Buhler, and R. Chamberlain, Acceleration of Ungapped Extension in Mercury BLAST, 7th workshop on media and streaming processors, 2005.

E. Gal and S. Toledo, Algorithms and data structures for flash memories, ACM Computing Surveys, vol.37, issue.2, pp.138-163, 2005.
DOI : 10.1145/1089733.1089735
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.381.3881

P. Krishnanurthy, J. Buhler, R. D. Chamberlain, M. A. Franklin, K. Gyang et al., Biosequence Similarity search on the Mercury system, Proceedings of the 15th IEEE International Conference on Application- Specific Systems, Architectures and Processors, pp.365-375, 2004.

D. Lavenier, D. Guytant, S. Derrien, and S. Rubini, A reconfigurable parallel disk system for filtering genomic banks, ERSA'03, Engineering of Reconfigurable Systems and Algorithms, 2003.

S. Guytant and D. Lavenier, Evaluation of anchoring scheme for fast DNA Sequence Alignment, European Conference on Computational Biology, 2003.

P. Guerdoux and D. Lavenier, SAMBA: Hardware Accelerator for Biological Sequence Comparison, CABIOS, vol.13, issue.6, 1997.

D. T. Hoang, Searching genetic databases on SPLASH2, FCCM'93, IEEE Workshop on FPGAs for Custom Computing Machines, 1993.

S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.215-403410, 1990.
DOI : 10.1016/S0022-2836(05)80360-2

W. R. Pearson and D. J. Lipman, Improved tools for biological sequence comparison., Proc. Natl. Acad. Sci, pp.3244-3248, 1988.
DOI : 10.1073/pnas.85.8.2444
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC280013/pdf

O. Gotoh, An improved algorithm for matching biological sequences, Journal of Molecular Biology, vol.162, issue.3, pp.705-708, 1982.
DOI : 10.1016/0022-2836(82)90398-9

T. F. Smith and M. S. Waterman, Identification of common molecular subsequences, Journal of Molecular Biology, vol.147, issue.1, pp.147-195, 1981.
DOI : 10.1016/0022-2836(81)90087-5

R. A. Wagner and M. J. Fischer, The String-to-String Correction Problem, Journal of the ACM, vol.21, issue.1, pp.168-173, 1974.
DOI : 10.1145/321796.321811