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Modélisation et simulation adaptatives pour les nanosciences

Stephane Redon
Franck Varenne; Marc Silberstein. Modéliser & simuler. Epistémologies et pratiques de la modélisation et de la simulation, 2, Éditions Matériologiques, 2014
Chapitre d'ouvrage hal-01085275v1

Editing molecular structures with smoothed articulated-body acceleration

Stephane Redon
Workshop on Robotics Methods for Structural and Dynamic Modeling of Molecular Systems, Robotics Science and Systems, Jul 2014, Berkeley, California, United States
Communication dans un congrès hal-01114539v1

Continuous Collision Detection

Stephane Redon
Ming C. Lin and Miguel A. Otaduy. Haptic Rendering: Foundations, Algorithms and Applications, A. K. Peters, Ltd., pp.253-276, 2008, 978-1568813325
Chapitre d'ouvrage inria-00390307v1

Practical modeling of molecular systems with symmetries

Sergei Grudinin , Stephane Redon
Journal of Computational Chemistry, 2010, 31 (9), pp.1799-1814. ⟨10.1002/jcc.21434⟩
Article dans une revue istex hal-00748028v1
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Nanotechnologie : conception à l'échelle atomique par Stéphane Redon. Dynamique moléculaire interactive, entretien avec Serge Crouzy, propos recueillis par Dominique Chouchan.

Stéphane Redon , Serge Crouzy
Les Cahiers de l'INRIA - La Recherche, 2009, Les 10 découvertes de l'année, 426 janvier 2009
Article dans une revue inria-00527621v1
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Adaptively Restrained Particle Simulations

Svetlana Artemova , Stephane Redon
Physical Review Letters, 2012, 109 (19), pp.190201:1-5. ⟨10.1103/PhysRevLett.109.190201⟩
Article dans une revue hal-00756121v1
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Comparing position and force control for interactive molecular simulators with haptic feedback

Aude Bolopion , Barthelemy Cagneau , Stephane Redon , Stéphane Régnier
Journal of Molecular Graphics and Modelling, 2010, 29 (2), pp.280-289. ⟨10.1016/j.jmgm.2010.06.003⟩
Article dans une revue hal-00748030v1
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Haptic molecular simulation based on force control

Aude Bolopion , Barthelemy Cagneau , Stephane Redon , Stéphane Régnier
AIM - 2010 IEEE/ASME International Conference on Advanced Intelligent Mechatronics, Jul 2010, Montréal, Canada. pp.329-334, ⟨10.1109/AIM.2010.5695764⟩
Communication dans un congrès hal-00784663v1
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Haptic feedback for molecular simulation

Aude Bolopion , Barthelemy Cagneau , Stephane Redon , Stéphane Régnier
IROS 2009 - IEEE/RSJ International Conference on Intelligent Robots and Systems, Oct 2009, St. Louis, MO, United States. pp.237-242, ⟨10.1109/IROS.2009.5354256⟩
Communication dans un congrès hal-00784678v1

Automatic molecular structure perception for the universal force field

Svetlana Artemova , Léonard Jaillet , Stephane Redon
Journal of Computational Chemistry, 2016, 37 (13), pp.1191-1205. ⟨10.1002/jcc.24309⟩
Article dans une revue istex hal-01282433v1

A comparison of neighbor search algorithms for large rigid molecules

Svetlana Artemova , Sergei Grudinin , Stephane Redon
Journal of Computational Chemistry, 2011, 32 (13), pp.2865-2877. ⟨10.1002/jcc.21868⟩
Article dans une revue istex hal-00748053v1
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Incremental update of electrostatic interactions in adaptively restrained particle simulations

Semeho Prince A. Edorh , Stephane Redon
Journal of Computational Chemistry, 2018, 39 (20), pp.1455-1469. ⟨10.1002/jcc.25215⟩
Article dans une revue hal-01761906v1

Six Degree-of-Freedom Rendering of Rigid Environments

Michael Ortega , Stephane Redon , Sabine Coquillart
Ming C. Lin and Miguel A. Otaduy. Haptic Rendering: Foundations, Algorithms and Applications, A. K. Peters, Ltd., pp.333-354, 2008, 978-1568813325. ⟨10.1201/b10636-19⟩
Chapitre d'ouvrage inria-00390308v1
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Single-pass Incremental Force Updates for Adaptively Restrained Molecular Dynamics

Krishna Kant Singh , Stephane Redon
Journal of Computational Chemistry, 2018, 39 (8), pp.412-423. ⟨10.1002/jcc.25126⟩
Article dans une revue hal-01635863v1

Error Analysis of Modified Langevin Dynamics

Stephane Redon , Gabriel Stoltz , Zofia Trstanova
Journal of Statistical Physics, 2016, 164 (4), pp.735-771. ⟨10.1007/s10955-016-1544-6⟩
Article dans une revue hal-01263700v1
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Adaptively Restrained Molecular Dynamics in LAMMPS

Krishna Kant Singh , Stephane Redon
Modelling and Simulation in Materials Science and Engineering, 2017, 25 (5), pp.055013. ⟨10.1088/1361-651X/aa7345⟩
Article dans une revue hal-01525253v1
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Variable gain haptic coupling for molecular simulation

Aude Bolopion , Barthelemy Cagneau , Stephane Redon , Stéphane Régnier
WHC 2011 - IEEE World Haptics Conference, Jun 2011, Istanbul, Turkey. pp.469-474, ⟨10.1109/WHC.2011.5945531⟩
Communication dans un congrès hal-00784641v1

Fast construction of assembly trees for molecular graphs

Svetlana Artemova , Sergei Grudinin , Stephane Redon
Journal of Computational Chemistry, 2011, 32 (8), pp.1589-1598. ⟨10.1002/jcc.21738⟩
Article dans une revue istex hal-00746836v1
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Generating conformational transition paths with low potential-energy barriers for proteins

Minh Khoa Nguyen , Léonard Jaillet , Stephane Redon
Journal of Computer-Aided Molecular Design, 2018, 32 (8), pp.853-867. ⟨10.1007/s10822-018-0137-7⟩
Article dans une revue hal-01973757v1
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IM-UFF: extending the Universal Force Field for interactive molecular modeling

Léonard Jaillet , Svetlana Artemova , Stephane Redon
Journal of Molecular Graphics and Modelling, 2017, 77, pp.350 - 362. ⟨10.1016/j.jmgm.2017.08.023⟩
Article dans une revue hal-01676519v1

Block-Adaptive Quantum Mechanics: An Adaptive Divide-and-Conquer Approach to Interactive Quantum Chemistry

Maël Bosson , Sergei Grudinin , Stephane Redon
Journal of Computational Chemistry, 2013, 34 (6), pp.492-504. ⟨10.1002/jcc.23157⟩
Article dans une revue istex hal-00755521v1
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As-Rigid-As-Possible molecular interpolation paths

Minh Khoa Nguyen , Léonard Jaillet , Stephane Redon
Journal of Computer-Aided Molecular Design, 2017, 31 (4), pp.403 - 417. ⟨10.1007/s10822-017-0012-y⟩
Article dans une revue hal-01676132v1
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Continuous Collision Detection for Adaptive Simulation of Articulated Bodies

Sujeong Kim , Stephane Redon , Young J. Kim
The Visual Computer, 2008, 24 (4), pp.261-269. ⟨10.1007/s00371-007-0196-6⟩
Article dans une revue istex inria-00390311v1
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View-dependent dynamics of articulated bodies

Sujeong Kim , Stephane Redon , Young J. Kim
Computer Animation and Virtual Worlds, 2008, 19 (3-4), pp.223-233. ⟨10.1002/cav.245⟩
Article dans une revue istex inria-00390310v1
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ART-RRT: As-Rigid-As-Possible exploration of ligand unbinding pathways

Minh Khoa Nguyen , Léonard Jaillet , Stephane Redon
Journal of Computational Chemistry, 2018, 39 (11), pp.665-678. ⟨10.1002/jcc.25132⟩
Article dans une revue hal-01973778v1
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Interactive physically-based structural modeling of hydrocarbon systems

Maël Bosson , Sergei Grudinin , Xavier Bouju , Stephane Redon
Journal of Computational Physics, 2012, 231 (6), pp.2581-2598. ⟨10.1016/j.jcp.2011.12.006⟩
Article dans une revue hal-00755542v1

Atomistic Modelling and Simulation of Transmission Electron Microscopy Images: Application to Intrinsic Defects of Graphene

Cyril Guedj , Léonard Jaillet , François Rousse , Stephane Redon
SIMULTECH 2018 - 8th International Conference on Simulation and Modeling Methodologies, Technologies and Applications, Jul 2018, Porto, Portugal. ⟨10.5220/0006829200150024⟩
Communication dans un congrès hal-01973626v1
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Parallel Adaptively Restrained Molecular Dynamics

Krishna Kant Singh , Dmitriy F. Marin , Stephane Redon
2017 International Conference on High Performance Computing & Simulation (HPCS), Jul 2017, Genova, Italy. pp.308 - 314, ⟨10.1109/HPCS.2017.55⟩
Communication dans un congrès hal-01591466v1
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Exploring the Use of Adaptively Restrained Particles for Graphics Simulations

Pierre-Luc Manteaux , François Faure , Stephane Redon , Marie-Paule Cani
VRIPHYS 2013 - 10th Workshop on Virtual Reality Interaction and Physical Simulation, Nov 2013, Lille, France. pp.17-24, ⟨10.2312/PE.vriphys.vriphys13.017-024⟩
Communication dans un congrès hal-00914653v1

Interactive Chemical Reactivity Exploration

Moritz P. Haag , Alain C. Vaucher , Maël Bosson , Stephane Redon , Markus Reiher
ChemPhysChem, 2014, 15 (15), pp.3301-3319. ⟨10.1002/cphc.201402342⟩
Article dans une revue hal-01091971v1