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Nouvelles méthodes de calcul pour la prédiction des interactions protéine-protéine au niveau structural

 Petr Popov
Mathématiques générales [math.GM]. Université Grenoble Alpes, 2015. Français. ⟨NNT : 2015GREAM005⟩
Thèse tel-01167112v1
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Eurecon: Equidistant Uniform Rigid-body Ensemble Constructor

 Petr Popov , Sergei Grudinin
Journal of Molecular Graphics and Modelling, 2018, 80, pp.313-319. ⟨10.1016/j.jmgm.2018.01.015⟩
Article dans une revue hal-01702810v1
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Rapid determination of RMSDs corresponding to macromolecular rigid body motions

 Petr Popov , Sergei Grudinin
Journal of Computational Chemistry, 2014, 35 (12), pp.950-956. ⟨10.1002/jcc.23569⟩
Article dans une revue hal-00952248v1
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Knowledge of Native Protein–Protein Interfaces Is Sufficient To Construct Predictive Models for the Selection of Binding Candidates

 Petr Popov , Sergei Grudinin
Journal of Chemical Information and Modeling, 2015, 55 (10), pp.2242-2255. ⟨10.1021/acs.jcim.5b00372⟩
Article dans une revue hal-01229886v1

DockTrina: Docking triangular protein trimers

 Petr Popov , David Ritchie , Sergei Grudinin
Proteins: Structure, Function, and Genetics, 2014, 82 (1), pp.34-44. ⟨10.1002/prot.24344⟩
Article dans une revue hal-00880359v1

Predicting Binding Poses and Affinities in the CSAR 2013―2014 Docking Exercises Using the Knowledge-Based Convex-PL Potential

 Sergei Grudinin , Petr Popov , Emilie Neveu , Georgy Cheremovskiy
Journal of Chemical Information and Modeling, 2016, 56 (6), pp.1053-1062. ⟨10.1021/acs.jcim.5b00339⟩
Article dans une revue hal-01258022v1
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PEPSI-Dock: a detailed data-driven protein–protein interaction potential accelerated by polar Fourier correlation

 Emilie Neveu , David Ritchie , Petr Popov , Sergei Grudinin
Bioinformatics, 2016, 32 (7), pp.i693-i701. ⟨10.1093/bioinformatics/btw443⟩
Article dans une revue hal-01358645v1
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RapidRMSD: Rapid determination of RMSDs corresponding to motions of flexible molecules

 Emilie Neveu , Petr Popov , Alexandre Hoffmann , Angelo Migliosi , Xavier Besseron , et al.
Bioinformatics, 2018, 34 (16), pp.2757-2765. ⟨10.1093/bioinformatics/bty160⟩
Article dans une revue hal-01735214v1

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

 Rocco Moretti , Sarel J Fleishman , Rudi Agius , Mieczyslaw Torchala , Paul A. Bates , et al.
Proteins - Structure, Function and Bioinformatics, 2013, 81 (11), pp.1980 - 1987. ⟨10.1002/prot.24356⟩
Article dans une revue hal-00905794v1

Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment

 Marc F. Lensink , Sameer Velankar , Andriy Kryshtafovych , Shen-You Huang , Dina Schneidman-Duhovy , et al.
Proteins - Structure, Function and Bioinformatics, 2016, Special Issue: Eleventh Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, 84 (S1), pp.323-348. ⟨10.1002/prot.25007⟩
Article dans une revue hal-01309105v1
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