4462 articles – 13150 references  [version française]
HAL: hal-00399260, version 1

Detailed view  Export this paper
BAGECO 10 : Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Uppsala : Suède (2009)
GEOMICROBIOLOGY OF EXTREME SOILS
Cédric Malandain 1, Jean-Paul Ambrosi 2, Elodie Vicini 1, Sébastien Cecillon 1, Timothy M. Vogel 1, Elisabeth Navarro 1, 3
(2009-06-15)

One third of New Caledonia is constituted of ultramafic rocks. The soils originating from these rocks are considered extreme since they are characterized by low organic matter and high heavy metal content. The open pit mines for nickel extraction have a significant impact on the environment by releasing heavy metals into the environment. A new mine, located on the Koniambo, north of New Caledonia, is about to be exploited. This is a unique occasion to study the impact of anthropogenic activity on the microbial diversity. The objectives of this work were to study the bacterial community diversity under the pristine conditions and to identify the soil characteristics driving the structure of bacterial communities down a Koniambo slope. Along this transect, 14 soils were sampled in triplicate and characterized for their geochemistry and bacterial diversity contents. To assess bacterial community structure, phylochips were used. The results showed that the 14 soils were clustered in 5 groups characterized by specific populations like Verrucomicrobia and Bacteroidetes for one of them and Gammaproteobacteria, Deinococcus and Crenarchaeota for another one. The microbial community structures vary in response to local characteristics such as the edaphic parameters and/or the vegetation. For example, correlations between Ca, Ni and Mg and specific populations were highlighted. In conclusion, this work emphasizes the effects of the environment on the microbial biodiversity and the dynamic underlying structure. Our improved knowledge will also help in the rehabilitation of the Koniambo site after the mining ends.
1:  Ampère
CNRS : UMR5005 – Université Claude Bernard - Lyon I – Institut National des Sciences Appliquées (INSA) - Lyon – Ecole Centrale de Lyon
2:  Centre européen de recherche et d'enseignement de géosciences de l'environnement (CEREGE)
CNRS : UMR6635 – Institut de recherche pour le développement [IRD] – INSU – Université de Provence - Aix-Marseille I – Université Paul Cézanne - Aix-Marseille III
3:  Laboratoire des symbioses tropicales et méditerranéennes (LSTM)
Centre de coopération internationale en recherche agronomique pour le développement [CIRAD] : UMR82 – Institut national de la recherche agronomique (INRA) – Institut de recherche pour le développement [IRD] – Université Montpellier II - Sciences et techniques – Université Montpellier I
Engineering Sciences/Electric power

Environmental Sciences/Biodiversity and Ecology