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| HAL : hal-00432548, version 1 |
| PubMed : 19398448 |
| PubMed Central : 2712331 |
| DOI : 10.1093/bioinformatics/btp250 |
| Fiche détaillée |  Récupérer au format |
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| Bioinformatics 25, 15 (2009) 1974-5 |
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| VARNA: Interactive drawing and editing of the RNA secondary structure. |
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| Kévin Darty 1Alain Denise 1, 2, 3 |
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| (01/08/2009) |
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| DESCRIPTION: VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases. FEATURES: VARNA implements four drawing algorithms, supports input/output using the classic formats dbn, ct, bpseq and RNAML and exports the drawing as five picture formats, either pixel-based (JPEG, PNG) or vector-based (SVG, EPS and XFIG). It also allows manual modification and structural annotation of the resulting drawing using either an interactive point and click approach, within a web server or through command-line arguments. AVAILABILITY: VARNA is a free software, released under the terms of the GPLv3.0 license and available at http://varna.lri.fr. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
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| 1 : | Laboratoire de Recherche en Informatique (LRI) |
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CNRS : UMR8623 – Université Paris XI - Paris Sud |
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| 2 : | Institut de génétique et microbiologie (IGM) |
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CNRS : UMR8621 – Université Paris XI - Paris Sud |
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| 3 : | AMIB (INRIA Saclay - Ile de France) |
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INRIA – Polytechnique - X – CNRS : UMR8623 – Université Paris XI - Paris Sud |
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| 4 : | Génomique des microorganismes |
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Université Pierre et Marie Curie [UPMC] - Paris VI – CNRS : FRE3214 |
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| Domaine | : | Sciences du Vivant/Bio-Informatique, Biologie Systémique Informatique/Bio-informatique |
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| Liste des fichiers attachés à ce document : | |||||
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| hal-00432548, version 1 | |
| http://hal.archives-ouvertes.fr/hal-00432548 | |
| oai:hal.archives-ouvertes.fr:hal-00432548 | |
| Contributeur : Yann Ponty | |
| Soumis le : Lundi 16 Novembre 2009, 16:02:52 | |
| Dernière modification le : Jeudi 3 Janvier 2013, 10:38:36 | |
