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Institute for Research in Computer Science and Random Systems |  |
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Institute for Research in Computer Science and Random Systems | |
| HAL: hal-00667920, version 1 |
| arXiv: 1202.2670 |
| See detailed view |  BibTeX,EndNote,... |
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| Nucleic Acids Research (2012) 303-309 |
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| CSA: Comprehensive comparison of pairwise protein structure alignments |
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Inken Wohlers 1Noël Malod-Dognin 2 |
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| For the Life Sciences, Centrum Wiskunde & Informatica, Science Park 123, 1098 XG Amsterdam, the Netherlands collaboration(s) |
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| (2012) |
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| CSA is a web server for the comprehensive comparison of pairwise protein structure alignments. Its exact alignment engine computes either optimal, top-scoring alignments or heuristic alignments with quality guarantee for the inter-residue distance based scorings of contact map overlap, PAUL, DALI and MATRAS. These and additional, uploaded alignments are compared using a number of quality measures and intuitive visualizations. CSA brings new insight into the structural relationship of the protein pairs under investigation and is a valuable tool for studying structural similarities. It is available at http://csa.project.cwi.nl |
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| 1: | Life Sciences (MAC4) |
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Centrum Wiskunde & Informatica |
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| 2: | ABS (INRIA Sophia Antipolis) |
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INRIA |
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| 3: | GENSCALE (INRIA - IRISA) |
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INRIA – CNRS : UMR6074 – Université de Rennes 1 – École normale supérieure de Cachan - ENS Cachan |
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| Domain | : | Computer Science/Bioinformatics Life Sciences/Quantitative Methods |
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| Protein structure alignments – alignment comparison – web server – exact algorithm – scoring function |
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| Attached file list to this document: | |||||
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| hal-00667920, version 1 | |
| http://hal.inria.fr/hal-00667920 | |
| oai:hal.inria.fr:hal-00667920 | |
| From: Rumen Andonov | |
| Submitted on: Monday, 13 February 2012 08:56:42 | |
| Updated on: Monday, 17 December 2012 21:51:03 | |
