%0 Journal Article
%T The Ocean Gene Atlas: exploring the biogeography of plankton genes online
%+ Diversité et Interactions au sein du Plancton Océanique (DIPO)
%+ Institut méditerranéen d'océanologie (MIO)
%+ Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology  [Zürich] (ETH Zürich)
%+ Génomique métabolique (UMR 8030)
%+ Global Oceans Systems Ecology & Evolution - Tara Oceans (GOSEE)
%A Villar, Emilie
%A Vannier, Thomas
%A Vernette, Caroline
%A Lescot, Magali
%A Cuenca, Miguelangel
%A Alexandre, Aurélien
%A Bachelerie, Paul
%A Rosnet, Thomas
%A Pelletier, Eric
%A Sunagawa, Shinichi
%A Hingamp, Pascal
%< avec comité de lecture
%@ 0305-1048
%J Nucleic Acids Research
%I Oxford University Press
%V 46
%N W1
%P gky376
%8 2018
%D 2018
%R 10.1093/nar/gky376
%Z Environmental Sciences/Biodiversity and Ecology
%Z Sciences of the Universe [physics]/Earth Sciences/OceanographyJournal articles
%X The Ocean Gene Atlas is a web service to explore the biogeography of genes from marine planktonic organisms. It allows users to query protein or nucleotide sequences against global ocean reference gene catalogs. With just one click, the abundance and location of target sequences are visualized on world maps as well as their taxonomic distribution. Interactive results panels allow for adjusting cutoffs for alignment quality and displaying the abundances of genes in the context of environmental features (temperature, nutrients, etc.) measured at the time of sampling. The ease of use enables non-bioinformaticians to explore quantitative and con-textualized information on genes of interest in the global ocean ecosystem. Currently the Ocean Gene Atlas is deployed with (i) the Ocean Microbial Reference Gene Catalog (OM-RGC) comprising 40 million non-redundant mostly prokaryotic gene sequences associated with both Tara Oceans and Global Ocean Sampling (GOS) gene abundances and (ii) the Marine Atlas of Tara Ocean Unigenes (MATOU) composed of >116 million eukaryote unigenes. Additional datasets will be added upon availability of further marine environmental datasets that provide the required complement of sequence assemblies, raw reads and contextual environmental parameters. Ocean Gene Atlas is a freely-available web service at: http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/.
%G English
%2 https://hal.sorbonne-universite.fr/hal-01803597/document
%2 https://hal.sorbonne-universite.fr/hal-01803597/file/gky376.pdf
%L hal-01803597
%U https://hal.sorbonne-universite.fr/hal-01803597
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