Preconditioning the bidomain model with almost linear complexity

Charles Pierre (1)

1 LMAP - Laboratoire de Mathématiques et de leurs Applications [Pau]

The bidomain model is widely used in electro-cardiology to simulate spreading of excitation in the myocardium and electrocardiograms. It consists of a system of two parabolic reaction diffusion equations coupled with an ODE system. Its discretisation displays an ill-conditioned system matrix to be inverted at each time step: simulations based on the bidomain model therefore are associated with high computational costs. In this paper we propose a preconditioning for the bidomain model either for an isolated heart or in an extended framework including a coupling with the surrounding tissues (the torso). The preconditioning is based on a formulation of the discrete problem that is shown to be symmetric positive semi-definite. A block $LU$ decomposition of the system together with a heuristic approximation (referred to as the monodomain approximation) are the key ingredients for the preconditioning definition. Numerical results are provided for two test cases: a 2D test case on a realistic slice of the thorax based on a segmented heart medical image geometry, a 3D test case involving a small cubic slab of tissue with orthotropic anisotropy. The analysis of the resulting computational cost (both in terms of CPU time and of iteration number) shows an almost linear complexity with the problem size, i.e. of type $n\log^\alpha(n)$ (for some constant $\alpha$) which is optimal complexity for such problems.

Mots clés: Bidomain and monodomain models; Reaction diffusion equations; Numerical simulations; preconditioning; electro-cardiology; hierarchical matrices; reaction diffusion equations * charlespierre@univ-paufr

Domaines: Analyse numérique [math.NA]

Charles Pierre. Preconditioning the bidomain model with almost linear complexity. Journal of Computational Physics, 2012, 231, pp.62-97. ⟨hal-00525976v4⟩