Parallelizing the ACGT OncoSimulator

Dominique Lavenier (1) , Julien Jacques (1)

1 SYMBIOSE - Biological systems and models, bioinformatics and sequences

Nowadays, clinician can take advantage of insilico technologies to get faster estimations on clinical treatments without performing time-consuming and expansive invivo experimentations. Among these techniques, tumor growth simulators can estimate tumor volume and the quantity of cells (stem, proliferating...) in function of the time and from a set of parameters. Within the framework of the ACGT European project, we are working on the development of the ACGT Oncosimulator which is based on the mathematical model from ICCS. In this paper, we relate the current computation techniques for increasing the ACGT Oncosimulator efficiency.

Mots clés: oncosimulator; parallelism

Domaines: Bio-informatique [q-bio.QM]; Modélisation et simulation

Dominique Lavenier, Julien Jacques. Parallelizing the ACGT OncoSimulator. 3rd International Advanced Research Workshop on In Silico Oncology, Sep 2008, Istanbul, Turkey. online proceedings: http://www.3rd-iarwiso.iccs.ntua.gr/. ⟨hal-00322703⟩