%0 Journal Article
%T A global ocean atlas of eukaryotic genes
%+ Génomique métabolique (UMR 8030)
%+ Laboratoire de Bioinformatique pour la Génomique et la Biodiversité  (LBGB)
%+ Genoscope - Centre national de séquençage [Evry] (GENOSCOPE)
%+ Institut de Biologie François JACOB (JACOB)
%+ Institute for Chemical Research, Kyoto University
%+ Catholic University of Leuven = Katholieke Universiteit Leuven (KU Leuven)
%+ Institut de biologie de l'ENS Paris (IBENS)
%+ Adaptation et diversité en milieu marin (ADMM)
%+ Hasso Plattner Institute [Potsdam, Germany]
%+ European Molecular Biology Laboratory [Heidelberg] (EMBL)
%+ Laboratoire d'océanographie de Villefranche (LOV)
%+ University of Hawai'i [Honolulu] (UH)
%+ Ohio State University [Columbus] (OSU)
%+ European Molecular Biology Laboratory [Grenoble] (EMBL)
%+ Diversité et Interactions au sein du Plancton Océanique (DIPO)
%+ Institut méditerranéen d'océanologie (MIO)
%+ Kyoto University
%+ Evolution des Protistes et Ecosystèmes Pélagiques (EPEP)
%+ Stazione Zoologica Anton Dohrn (SZN)
%A Carradec, Quentin
%A Pelletier, Eric
%A da Silva, Corinne
%A Alberti, Adriana, A.
%A Seeleuthner, Yoann
%A Blanc-Mathieu, Romain
%A Lima-Mendez, Gipsi
%A Rocha, Fabio
%A Tirichine, Leila
%A Labadie, Karine
%A Kirilovsky, Amos
%A Bertrand, Alexis
%A Engelen, Stefan
%A Madoui, Mohammed-Amin
%A Méheust, Raphaël
%A Poulain, Julie
%A Romac, Sarah
%A Richter, Daniel
%A Yoshikawa, Genki
%A Dimier, Céline
%A Kandels-Lewis, Stefanie
%A Picheral, Marc
%A Searson, Sarah
%A Jaillon, Olivier
%A Aury, Jean-Marc
%A Karsenti, Eric
%A Sullivan, Matthew
%A Sunagawa, Shinichi
%A Bork, Peer
%A Not, Fabrice
%A Hingamp, Pascal
%A Raes, Jeroen, J.
%A Guidi, Lionel
%A Ogata, Hiroyuki
%A de Vargas, Colomban
%A Iudicone, Daniele
%A Bowler, Chris
%A Wincker, Patrick
%A Weissenbach, Jean
%< avec comité de lecture
%@ 2041-1723
%J Nature Communications
%I Nature Publishing Group
%V 9
%N 1
%P 373
%8 2018-12
%D 2018
%R 10.1038/s41467-017-02342-1
%Z Life Sciences [q-bio]
%Z Environmental Sciences/Biodiversity and Ecology
%Z Life Sciences [q-bio]/BiodiversityJournal articles
%X While our knowledge about the roles of microbes and viruses in the ocean has increased tremendously due to recent advances in genomics and metagenomics, research on marine microbial eukaryotes and zooplankton has benefited much less from these new technologies because of their larger genomes, their enormous diversity, and largely unexplored physiologies. Here, we use a metatranscriptomics approach to capture expressed genes in open ocean Tara Oceans stations across four organismal size fractions. The individual sequence reads cluster into 116 million unigenes representing the largest reference collection of eukaryotic transcripts from any single biome. The catalog is used to unveil functions expressed by eukaryotic marine plankton, and to assess their functional biogeography. Almost half of the sequences have no similarity with known proteins, and a great number belong to new gene families with a restricted distribution in the ocean. Overall, the resource provides the foundations for exploring the roles of marine eukaryotes in ocean ecology and biogeochemistry.
%G English
%2 https://cea.hal.science/cea-01874711/document
%2 https://cea.hal.science/cea-01874711/file/1471.pdf
%L cea-01874711
%U https://cea.hal.science/cea-01874711
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%~ ADMM-EPEP
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