ref_biblio

Christina Hazard, David Johnson. Does genotypic and species diversity of mycorrhizal plants and fungi affect ecosystem function?. New Phytologist, 2018, 7 p. ⟨10.1111/nph.15010⟩. ⟨hal-01702234⟩

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Irini Djeran-Maigre, Philippe Dubujet, Timothy M. Vogel. Variation over time of excavated soil properties treated with surfactants. Environmental Earth Sciences, 2018, 77 (67), 12 p. ⟨10.1007/s12665-018-7230-z⟩. ⟨hal-01702264⟩

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Jean-Michel Hily, Sandrine Demanèche, Nils Poulicard, Mélanie Tannières, Samia Djennane, et al.. Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal, 2017, 16 (1), pp.208-220. ⟨10.1111/pbi.12761⟩. ⟨hal-01588179⟩

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Agathe Paitier, Alexiane Godain, Delina Lyon, Naoufel Haddour, Timothy M. Vogel, et al.. Microbial fuel cell anodic microbial population dynamics during MFC start-up. Biosensors and Bioelectronics, 2017, 92, pp.357 - 363. ⟨10.1016/j.bios.2016.10.096⟩. ⟨hal-01588970⟩

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Cécile Gubry-Rangin, Breda Novotnik, Ines Mandič-Mulec, Graeme W. Nicol, James I. Prosser. Temperature responses of soil ammonia-oxidising archaea depend on pH. Soil Biology and Biochemistry, 2017, 106, pp.61 - 68. ⟨10.1016/j.soilbio.2016.12.007⟩. ⟨hal-01588948⟩

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Juliana B. Müller, Débora T. Ramos, Catherine Larose, Marilda Fernandes, Helen S.C. Lazzarin, et al.. Combined iron and sulfate reduction biostimulation as a novel approach to enhance BTEX and PAH source-zone biodegradation in biodiesel blend-contaminated groundwater. Journal of Hazardous Materials, 2017, 326, pp.229 - 236. ⟨10.1016/j.jhazmat.2016.12.005⟩. ⟨hal-01588965⟩

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Franciele Fedrizzi, Débora T. Ramos, Helen S. C. Lazzarin, Catherine Larose, Timothy M. Vogel, et al.. A Modified Approach for in Situ Chemical Oxidation Coupled to Biodegradation Enhances Light Nonaqueous Phase Liquid Source-Zone Remediation. Environmental Science and Technology, 2017, 51 (1), pp.463 - 472. ⟨10.1021/acs.est.6b03604⟩. ⟨hal-01588980⟩

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Habteab Habtom, Sandrine Demanèche, Lorna Dawson, Chen Azulay, Ofra Matan, et al.. Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies. Forensic Science International: Genetics , 2017, 26, pp.21 - 29. ⟨10.1016/j.fsigen.2016.10.005⟩. ⟨hal-01588958⟩

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Sandrine Demanèche, Leif Schauser, Lorna Dawson, Laure Franqueville, Pascal Simonet. Microbial soil community analyses for forensic science: Application to a blind test. Forensic Science International, 2017, 270, pp.153 - 158. ⟨10.1016/j.forsciint.2016.12.004⟩. ⟨hal-01588951⟩

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Débora Toledo Ramos, Helen Simone Chiaranda Lazzarin, Pedro J.J. Alvarez, Timothy M. Vogel, Marilda Fernandes, et al.. Biodiesel presence in the source zone hinders aromatic hydrocarbons attenuation in a B20-contaminated groundwater. Journal of Contaminant Hydrology, 2016, 193, pp.48 - 53. ⟨10.1016/j.jconhyd.2016.09.002⟩. ⟨hal-01588990⟩

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Thibaut Masy, Sandrine Demanèche, Olivier Tromme, Philippe Thonart, Philippe Jacques, et al.. Hydrocarbon biostimulation and bioaugmentation in organic carbon and clay-rich soils. Soil Biology and Biochemistry, 2016, 99, pp.66 - 74. ⟨10.1016/j.soilbio.2016.04.016⟩. ⟨hal-01589025⟩

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Qiongli Bao, Yizong Huang, Fenghua Wang, Sanan Nie, Graeme W. Nicol, et al.. Effect of nitrogen fertilizer and/or rice straw amendment on methanogenic archaeal communities and methane production from a rice paddy soil. Applied Microbiology and Biotechnology, 2016, 100 (13), pp.5989 - 5998. ⟨10.1007/s00253-016-7377-z⟩. ⟨hal-01589066⟩

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Laura E. Lehtovirta-Morley, Luis A. Sayavedra-Soto, Nicolas Gallois, Stefan Schouten, Lisa Y. Stein, et al.. Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”. Applied and Environmental Microbiology, 2016, 82 (9), pp.2608 - 2619. ⟨10.1128/AEM.04031-15⟩. ⟨hal-03906404⟩

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Eduard Vico Oton, Christopher Quince, Graeme W Nicol, James I Prosser, Cécile Gubry-Rangin. Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota. The International Society of Microbiologial Ecology Journal, 2016, 10 (1), pp.85 - 96. ⟨10.1038/ismej.2015.101⟩. ⟨hal-01589185⟩

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Bertrand Reuillard, Caroline Abreu, Noémie Lalaoui, Alan Le Goff, Michael Holzinger, et al.. One-year stability for a glucose/oxygen biofuel cell combined with pH reactivation of the laccase/carbon nanotube biocathode. Bioelectrochemistry, 2015, 106, pp.73 - 76. ⟨10.1016/j.bioelechem.2015.04.009⟩. ⟨hal-01388118⟩

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Jérémy Pivetal, Marie Frénéa-Robin, Naoufel Haddour, C. Vézy, L.-F. Zanini, et al.. Development and applications of a DNA labeling method with magnetic nanoparticles to study the role of horizontal gene transfer events between bacteria in soil pollutant bioremediation processes. Environmental Science and Pollution Research, 2015, 22 (24), pp.20322-20327. ⟨10.1007/s11356-015-5614-0⟩. ⟨hal-01389933⟩

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Elisabeth Navarro, Olivier Fabrègue, Riccardo Scorretti, Jérémy Reboulet, Pascal Simonet, et al.. RisaAligner software for aligning fluorescence data between Agilent 2100 Bioanalyzer chips: Application to soil microbial community analysis. Biotechniques, 2015, 59 (6), pp.347-358. ⟨10.2144/000114363⟩. ⟨hal-01245371⟩

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Chengsheng Zhu, Tom O. Delmont, Timothy M. Vogel, Yana Bromberg. Functional Basis of Microorganism Classification. PLoS Computational Biology, 2015, 11 (8), ⟨10.1371/journal.pcbi.1004472⟩. ⟨hal-01589154⟩

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Tom O. Delmont, A. Murat Eren, Lorrie Maccario, Emmanuel Prestat, Özcan C. Esen, et al.. Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics. Frontiers in Microbiology, 2015, 6, ⟨10.3389/fmicb.2015.00358⟩. ⟨hal-01589179⟩

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Laura Sanguino Casado, Laure Franqueville, Timothy M. Vogel, Catherine Larose. Linking environmental prokaryotic viruses and their host through CRISPRs. FEMS Microbiology Ecology, 2015, 91 (5), ⟨10.1093/femsec/fiv046⟩. ⟨hal-01589168⟩

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Jérémy Pivetal, David Royet, Georgeta Ciuta, Marie Frénéa-Robin, Naoufel Haddour, et al.. Micro-magnet arrays for specific single bacterial cell positioning. Journal of Magnetism and Magnetic Materials, 2015, 380, pp.72-77. ⟨10.1016/j.jmmm.2014.09.068⟩. ⟨hal-01113985⟩

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Jérémy Pivetal, Georgeta Ciuta, Marie Frénéa-Robin, Naoufel Haddour, Nora M. Dempsey, et al.. Magnetic nanoparticle DNA labeling for individual bacterial cell detection and recovery. Journal of Microbiological Methods, 2014, 107, pp.84-91. ⟨10.1016/j.mimet.2014.09.006⟩. ⟨hal-01113982⟩

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Yoann Le Digabel, Sandrine Demanèche, Yves Benoit, Françoise Fayolle-Guichard, Timothy M. Vogel. Ethyl tert-butyl ether (ETBE)-degrading microbial communities in enrichments from polluted environments. Journal of Hazardous Materials, 2014, 279, pp.502-510. ⟨10.1016/j.jhazmat.2014.07.013⟩. ⟨hal-01075205⟩

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Joseph Nesme, Sébastien Cecillon, Tom Delmont, Jean-Michel Monier, Timothy M. Vogel, et al.. Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment. Current Biology - CB, 2014, pp.voir DOI. ⟨10.1016/j.cub.2014.03.036⟩. ⟨hal-00988678⟩

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Samuel Jacquiod, Sandrine Demanèche, Laure Franqueville, Luka Ausec, Zhuofei Xu, et al.. Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library. Journal of Biotechnology, 2014, epub ahead of print. ⟨10.1016/j.jbiotec.2014.03.036⟩. ⟨hal-00989480⟩

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Jérémy Pivetal, Sylvain Toru, Marie Frénéa-Robin, Naoufel Haddour, Sébastien Cecillon, et al.. Selective isolation of bacterial cells within a microfluidic device using magnetic probe-based cell fishing. Sensors and Actuators B: Chemical, 2014, 195, pp.581-589. ⟨10.1016/j.snb.2014.01.004⟩. ⟨hal-00946208⟩

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Alban Mathieu, Timothy M. Vogel, Pascal Simonet. The future of skin metagenomics. Research in Microbiology, 2013, 165 (2), pp.69-76. ⟨10.1016/j.resmic.2013.12.002⟩. ⟨hal-00925305⟩

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Yoann Le Digabel, Sandrine Demanèche, Yves Benoit, Timothy M. Vogel, Françoise Fayolle-Guichard. Ethyl tert-butyl ether (ETBE) biodegradation by a syntrophic association of Rhodococcus sp. IFP 2042 and Bradyrhizobium sp. IFP 2049 isolated from a polluted aquifer. Applied Microbiology and Biotechnology, 2013, 97 (24), pp.10531-10539. ⟨10.1007/s00253-013-4803-3⟩. ⟨hal-01075203⟩

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Catherine Larose, Emmanuel Prestat, Sébastien Cecillon, Sibel Berger, Cédric Malandain, et al.. Interactions between Snow Chemistry, Mercury Inputs and Microbial Population Dynamics in an Arctic Snowpack. PLoS ONE, 2013, 8 (11), pp.e79972. ⟨10.1371/journal.pone.0079972⟩. ⟨hal-00925290⟩

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Samuel Jacquiod, Laure Franqueville, Sébastien Cecillon, Timothy M. Vogel, Pascal Simonet. Soil Bacterial Community Shifts after Chitin Enrichment: An Integrative Metagenomic Approach. PLoS ONE, 2013, 8 (11), pp.e79699. ⟨10.1371/journal.pone.0079699⟩. ⟨hal-00920266⟩

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Saïd Jebors, Sébastien Cecillon, Clément Faye, Christine Enjalbal, Muriel Amblard, et al.. From protected trialkoxysilyl-peptide building blocks to bioorganic-silica hybrid materials. Journal of Materials Chemistry, 2013, pp.6510. ⟨10.1039/c3tb21326a⟩. ⟨hal-00921998⟩

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J. S. Bowman, Catherine Larose, Timothy M. Vogel, Jody W. Deming. Selective occurrence of Rhizobiales in frost flowers on the surface of young sea ice near Barrow, Alaska and distribution in the polar marine rare biosphere.. Environmental Microbiology Reports, 2013, 5 (4), pp.575-82. ⟨10.1111/1758-2229.12047⟩. ⟨hal-00925281⟩

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Tom Delmont, Pascal Simonet, Timothy M. Vogel. Mastering methodological pitfalls for surviving the metagenomic jungle.. BioEssays, 2013, 35 (8), pp.744-54. ⟨10.1002/bies.201200155⟩. ⟨hal-00846141⟩

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William H. Gaze, Stephen Krone, Joachim D.G. Larsson, Xian-Zhi Li, Joseph A. Robinson, et al.. Influence of Humans on Evolution and Mobilization of Environmental Antibiotic Resistome. Emerging Infectious Diseases, 2013, 19 (7), Online Report. ⟨10.3201/eid1907.120871⟩. ⟨hal-00925300⟩

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Alban Mathieu, Tom Delmont, Timothy M. Vogel, Patrick Robe, Renaud Nalin, et al.. Life on Human Surfaces: Skin Metagenomics. PLoS ONE, 2013, 8 (6), pp.e65288. ⟨10.1371/journal.pone.0065288⟩. ⟨hal-00846134⟩

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Emmanuel Prestat, Sérgio Rodrigues de Morais, Julie A Vendrell, Aurélie Thollet, Christian Gautier, et al.. Learning the local Bayesian network structure around the ZNF217 oncogene in breast tumours. Computers in Biology and Medicine, 2013, 43 (4), pp.334-341. ⟨10.1016/j.compbiomed.2012.12.002⟩. ⟨hal-00851231⟩

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Catherine Larose, Aurélien Dommergue, Timothy M. Vogel. The Dynamic Arctic Snow Pack: An Unexplored Environment for Microbial Diversity and Activity. biology, 2013, 2 (1), pp.317-330. ⟨10.3390/biology2010317⟩. ⟨hal-00846152⟩

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Catherine Larose, Aurélien Dommergue, Timothy M. Vogel. Microbial nitrogen cycling in Arctic snowpacks. Environmental Research Letters, 2013, 8 (3), pp.5004. ⟨10.1088/1748-9326/8/3/035004⟩. ⟨hal-00925293⟩

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Matthieu Moingt, Marc Lucotte, Jean-Sébastien Beaulne. The influence of anthropogenic disturbances and watershed morphological characteristics on Hg dynamics in Northern Quebec large boreal lakes. Advances in Environmental Research, 2013, 2 (2), pp.81-98. ⟨10.12989/aer.2013.2.2.081⟩. ⟨hal-00925304⟩

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Tom Delmont, Emmanuel Prestat, Kevin P. Keegan, Michael Faubladier, Patrick Robe, et al.. Structure, fluctuation and magnitude of a natural grassland soil metagenome.. The International Society of Microbiologial Ecology Journal, 2012, 6 (9), pp.1677-87. ⟨10.1038/ismej.2011.197⟩. ⟨hal-00747243⟩

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Eric Dugat-Bony, Corinne Biderre-Petit, Faouzi Jaziri, Maude M. David, Jérémie Denonfoux, et al.. In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes. Microbial Biotechnology, 2012, 5 (5 SI), pp.642-653. ⟨10.1111/j.1751-7915.2012.00339.x⟩. ⟨hal-00747255⟩

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Tom Delmont, Pascal Simonet, Timothy M. Vogel. Describing microbial communities and performing global comparisons in the 'omic era.. The International Society of Microbiologial Ecology Journal, 2012, 6 (9), pp.1625-8. ⟨10.1038/ismej.2012.55⟩. ⟨hal-00747239⟩

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Thomas A. Douglas, Lisa L. Loseto, Robie Macdonald, Peter Outridge, Aurélien Dommergue, et al.. The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review. Environmental Chemistry, 2012, 9 (4), pp.321-355. ⟨10.1071/EN11140⟩. ⟨hal-00846180⟩

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Ludovic Castro, A. Dommerguet, Catherine Larose, C. Ferrari, Laurent Maron. A Theoretical Study of Abiotic Methylation Reactions of Gaseous Elemental Mercury by Halogen-Containing Molecules. Journal of Physical Chemistry A, 2012, 115 (22), pp.5602-5608. ⟨10.1021/jp200643n⟩. ⟨insu-00646712⟩

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Xiaojun Zhang, Joseph Nesme, Pascal Simonet, Asa Frostegard. Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation. Research in Microbiology, 2012, 163 (3), pp.200-210. ⟨10.1016/j.resmic.2012.01.007⟩. ⟨hal-00747248⟩

ref_biblio

Tom Delmont, Cédric Malandain, Emmanuel Prestat, Catherine Larose, Jean-Michel Monier, et al.. Metagenomic mining for microbiologists. The International Society of Microbiologial Ecology Journal, 2011, 5 (12), pp.1837-1843. ⟨10.1038/ismej.2011.61⟩. ⟨hal-00747250⟩

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Nathalie Lombard, Emmanuel Prestat, Jan Dirk van Elsas, Pascal Simonet. Soil-specific limitations for access and analysis of soil microbial communities by metagenomics. FEMS Microbiology Ecology, 2011, 78 (1), pp.31-49. ⟨10.1111/j.1574-6941.2011.01140.x⟩. ⟨hal-00630138⟩

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Sandrine Demanèche, Jean-Michel Monier, Eric Dugat-Bony, Pascal Simonet. Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria. FEMS Microbiology Ecology, 2011, 78 (1), pp.129-136. ⟨10.1111/j.1574-6941.2011.01126.x⟩. ⟨hal-00630134⟩

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Nicolas Marusczak, Catherine Larose, A. Dommergue, E. Yumvihoze, D. Lean, et al.. Total mercury and methylmercury in high altitude surface snow from the French Alps. Science of the Total Environment, 2011, 409 (19), pp.3949-3954. ⟨10.1016/j.scitotenv.2011.06.040⟩. ⟨insu-00647117⟩

ref_biblio

Tom Delmont, Patrick Robe, Ian M. Clark, Pascal Simonet, Timothy M Vogel. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods, 2011, 86 (3), pp.397-400. ⟨10.1016/j.mimet.2011.06.013⟩. ⟨hal-00629399⟩

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Nicolas Degrenne, François Buret, Bruno Allard, Jean-Michel Monier. Progress in Microbial Fuel Cells Energy Production. Advanced Materials Research, 2011, 324, pp.457-460. ⟨10.4028/www.scientific.net/AMR.324.457⟩. ⟨hal-00638261⟩

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Jean-Michel Monier, Sandrine Demanèche, Tom Delmont, Alban Mathieu, Timothy M Vogel, et al.. Metagenomic exploration of antibiotic resistance in soil. Current Opinion in Microbiology, 2011, 14 (3), pp.229-235. ⟨10.1016/j.mib.2011.04.010⟩. ⟨hal-00629407⟩

ref_biblio

Tom Delmont, Patrick Robe, Sébastien Cecillon, Ian M. Clark, Florentin Constancias, et al.. Accessing the Soil Metagenome for Studies of Microbial Diversity. Applied and Environmental Microbiology, 2011, 77 (4), pp.1315-1324. ⟨10.1128/AEM.01526-10⟩. ⟨hal-00579312⟩

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Jack Gilbert, Ronald O'Dor, Timothy M. Vogel. Survey data are still vital to science. Nature, 2011, 469 (7329), pp.162. ⟨10.1038/469162a⟩. ⟨hal-00579327⟩

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Sandrine Demanèche, Camille Brard, Oscar Lima, Françoise Binet, Pascal Simonet. Development of a new tool to improve gene transfer frequency calculations. Journal of Microbiological Methods, 2011, 86 (2), pp.255-257. ⟨10.1016/j.mimet.2011.05.014⟩. ⟨hal-00627100⟩

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Imes Petric, Laurent Philippot, Cristina Abbate, Antonio Bispo, Thierry Chesnot, et al.. Inter-laboratory evaluation of the ISO standard 11063 "soil quality - method to directly extract DNA from soil samples". Journal of Microbiological Methods, 2011, 84 (3), pp.454-460. ⟨10.1016/j.mimet.2011.01.016⟩. ⟨ineris-00963282⟩

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Jérémy Pivetal, Osman Osman, Cyrille Vézy, Marie Frénéa-Robin, Frédéric Dumas-Bouchiat, et al.. Trapping of Magnetically‐Labelled Liposomes on Flat Micro‐Patterned Hard Magnetic Films. AIP Conference Proceedings, 2010, 1311 (1), pp.192-197. ⟨10.1063/1.3530011⟩. ⟨hal-00734066⟩

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Marina Hery, Hervé Sanguin, Sergio Perez Fabiel, Xavier Lefebvre, Timothy M. Vogel. Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining DNA phylochip and respirometry techniques. Water Research, 2010, 44 (20), pp.6133-6143. ⟨10.1016/j.watres.2010.07.003⟩. ⟨hal-00579323⟩

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Catherine Larose, A. Domergue, Martine de Angelis, Daniel Cossa, Bernard Averty, et al.. Springtime changes in snow chemistry lead to new insights into mercury methylation in the Arctic. Geochimica et Cosmochimica Acta, 2010, 74 (22), pp.6263-6275. ⟨10.1016/j.gca.2010.08.043⟩. ⟨insu-00562243⟩

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Alessandra Pontiroli, Maria Teresa Ceccherini, John Poté, Walter Wildi, Elizabeth Kay, et al.. Long-term persistence and bacterial transformation potential of transplastomic plant DNA in soil. Research in Microbiology, 2010, 161 (5), pp.326-334. ⟨10.1016/j.resmic.2010.04.009⟩. ⟨hal-00539229⟩

ref_biblio

Delina Y. Lyon, Jérémy Pivetal, Laurine Blanchard, Timothy M. Vogel. Bioremediation via In Situ Electrotransformation. Bioremediation Journal, 2010, 14 (2), pp.109-119. ⟨10.1080/10889861003767092⟩. ⟨hal-00925250⟩

ref_biblio

Cédric Malandain, Françoise Fayolle-Guichard, Timothy M. Vogel. Cytochromes P450-mediated degradation of fuel oxygenates by environmental isolates. FEMS Microbiology Ecology, 2010, 72 (2), pp.289-296. ⟨10.1111/j.1574-6941.2010.00847.x⟩. ⟨hal-00476162⟩

ref_biblio

Delina Y. Lyon, François Buret, Timothy M. Vogel, Jean-Michel Monier. Is resistance futile? Changing external resistance does not improve microbial fuel cell performance. Biochemistry, 2010, 78 (1), pp.2-7. ⟨10.1016/j.bioelechem.2009.09.001⟩. ⟨hal-00417880⟩

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Delina Y. Lyon, Jean-Michel Monier, Sébastien Dupraz, Caroline Freissinet, Pascal Simonet, et al.. Integrity and Biological Activity of DNA after UV Exposure. Astrobiology, 2010, 10 (3), pp.285-292. ⟨10.1089/ast.2009.0359⟩. ⟨hal-00539533⟩

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Amy R. Sapkota, Sibel Berger, Timothy M. Vogel. Human Pathogens Abundant in the Bacterial Metagenome of Cigarettes. Environmental Health Perspectives, 2010, 118 (3), pp.351-356. ⟨10.1289/ehp.0901201⟩. ⟨hal-00476194⟩

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Catherine Larose, Sibel Berger, Christophe P. Ferrari, Elisabeth Navarro, Aurélien Dommergue, et al.. Microbial sequences retrieved from environmental samples from seasonal Arctic snow and meltwater from Svalbard, Norway. Extremophiles, 2010, 14 (2), pp.205-212. ⟨10.1007/s00792-009-0299-2⟩. ⟨hal-00476166⟩

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John Poté, Maria Teresa Ceccherini, Walter Rosselli, Walter Wildi, Pascal Simonet, et al.. Leaching and transformability of transgenic DNA in unsaturated soil columns. Ecotoxicology and Environmental Safety, 2010, 73 (1), pp.67-72. ⟨10.1016/j.ecoenv.2009.09.009⟩. ⟨hal-00476159⟩

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Audra Nemir, Maude M. David, Ronan Perrussel, Amy R. Sapkota, Pascal Simonet, et al.. Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils. Chemosphere, 2010, 80 (5), pp.600-607. ⟨10.1016/j.chemosphere.2010.03.036⟩. ⟨hal-00515484⟩

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Ana-Maria Florescu, Marc Joyeux, Bénédicte Lafay. Modeling of 2-D DNA display.. Electrophoresis, 2009, 30 (21), pp.3649-56. ⟨10.1002/elps.200900258⟩. ⟨hal-00431057⟩

ref_biblio

Timothy M Vogel, Penny R. Hirsch, Pascal Simonet, Janet K. Jansson, James M. Tiedje, et al.. Advantages of the metagenomic approach for soil exploration: reply from Vogel et al.. Nature Reviews Microbiology, 2009, 7 (10), pp.756 - 757. ⟨10.1038/nrmicro2119-c3⟩. ⟨hal-00418305⟩

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Alessandra Pontiroli, Aurora Rizzi, Pascal Simonet, Daniele Daffonchio, Timothy M. Vogel, et al.. Visual Evidence of Horizontal Gene Transfer between Plants and Bacteria in the Phytosphere of Transplastomic Tobacco. Applied and Environmental Microbiology, 2009, 75 (10), pp.3314-3322. ⟨10.1128/AEM.02632-08⟩. ⟨hal-00391652⟩

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John Poté, Patrick Mavingui, Elisabeth Navarro, Walter Rosselli, Walter Wildi, et al.. Extracellular plant DNA in Geneva groundwater and traditional artesian drinking water fountains. Chemosphere, 2009, 75 (4), pp.498-504. ⟨10.1016/j.chemosphere.2008.12.048⟩. ⟨hal-00368906⟩

ref_biblio

Timothy M Vogel, Pascal Simonet, Janet K. Jansson, Penny R. Hirsch, James M. Tiedje, et al.. TerraGenome: a consortium for the sequencing of a soil metagenome. Nature Reviews Microbiology, 2009, 7 (4), pp.252. ⟨10.1038/nrmicro2119⟩. ⟨hal-00391653⟩

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Jan Sørensen, Mette Haubjerg Nicolaisen, Eliora Ron, Pascal Simonet. Molecular tools in rhizosphere microbiology—from single-cell to whole-community. Plant and Soil, 2009, 321 (1-2), pp.483-512. ⟨10.1007/s11104-009-9946-8⟩. ⟨hal-00411800⟩

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Sandrine Demanèche, Laurent Philippot, Maude M. David, Elisabeth Navarro, Timothy M Vogel, et al.. Characterization of Denitrification Gene Clusters of Soil Bacteria via a Metagenomic Approach. Applied and Environmental Microbiology, 2009, 75 (2), pp.534-537. ⟨10.1128/aem.01706-08⟩. ⟨hal-00368298⟩

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Florian Liegeois, Bénédicte Lafay, Pierre Formenty, Sabrina Locatelli, Valérie Courgnaud, et al.. Full-Length Genome Characterization of a Novel Simian Immunodeficiency Virus Lineage (SIVolc) from Olive Colobus (Procolobus verus) and New SIVwrcPbb Strains from Western Red Colobus (Piliocolobus badius badius) from the Taï Forest in Ivory Coast. Journal of Virology, 2009, 83 (1), pp.428-439. ⟨10.1128/JVI.01725-08⟩. ⟨hal-00399031⟩

ref_biblio

Sandrine Demanèche, Maude M. David, Elisabeth Navarro, Pascal Simonet, Timothy M Vogel. Evaluation of functional gene enrichment in a soil metagenomic clone library. Journal of Microbiological Methods, 2009, 76 (1), pp.105-107. ⟨10.1016/j.mimet.2008.09.009⟩. ⟨hal-00368291⟩

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