ref_biblio

Christina Hazard, David Johnson. Does genotypic and species diversity of mycorrhizal plants and fungi affect ecosystem function?. New Phytologist, 2018, 7 p. ⟨10.1111/nph.15010⟩. ⟨hal-01702234⟩

ref_biblio

Irini Djeran-Maigre, Philippe Dubujet, Timothy M. Vogel. Variation over time of excavated soil properties treated with surfactants. Environmental Earth Sciences, 2018, 77 (67), 12 p. ⟨10.1007/s12665-018-7230-z⟩. ⟨hal-01702264⟩

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Jean-Michel Hily, Sandrine Demanèche, Nils Poulicard, Mélanie Tannières, Samia Djennane, et al.. Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal, 2017, 16 (1), pp.208-220. ⟨10.1111/pbi.12761⟩. ⟨hal-01588179⟩

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Agathe Paitier, Alexiane Godain, Delina Lyon, Naoufel Haddour, Timothy M. Vogel, et al.. Microbial fuel cell anodic microbial population dynamics during MFC start-up. Biosensors and Bioelectronics, 2017, 92, pp.357 - 363. ⟨10.1016/j.bios.2016.10.096⟩. ⟨hal-01588970⟩

ref_biblio

Cécile Gubry-Rangin, Breda Novotnik, Ines Mandič-Mulec, Graeme W. Nicol, James I. Prosser. Temperature responses of soil ammonia-oxidising archaea depend on pH. Soil Biology and Biochemistry, 2017, 106, pp.61 - 68. ⟨10.1016/j.soilbio.2016.12.007⟩. ⟨hal-01588948⟩

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Juliana B. Müller, Débora T. Ramos, Catherine Larose, Marilda Fernandes, Helen S.C. Lazzarin, et al.. Combined iron and sulfate reduction biostimulation as a novel approach to enhance BTEX and PAH source-zone biodegradation in biodiesel blend-contaminated groundwater. Journal of Hazardous Materials, 2017, 326, pp.229 - 236. ⟨10.1016/j.jhazmat.2016.12.005⟩. ⟨hal-01588965⟩

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Franciele Fedrizzi, Débora T. Ramos, Helen S. C. Lazzarin, Catherine Larose, Timothy M. Vogel, et al.. A Modified Approach for in Situ Chemical Oxidation Coupled to Biodegradation Enhances Light Nonaqueous Phase Liquid Source-Zone Remediation. Environmental Science and Technology, 2017, 51 (1), pp.463 - 472. ⟨10.1021/acs.est.6b03604⟩. ⟨hal-01588980⟩

ref_biblio

Sandrine Demanèche, Leif Schauser, Lorna Dawson, Laure Franqueville, Pascal Simonet. Microbial soil community analyses for forensic science: Application to a blind test. Forensic Science International, 2017, 270, pp.153 - 158. ⟨10.1016/j.forsciint.2016.12.004⟩. ⟨hal-01588951⟩

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Habteab Habtom, Sandrine Demanèche, Lorna Dawson, Chen Azulay, Ofra Matan, et al.. Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies. Forensic Science International: Genetics , 2017, 26, pp.21 - 29. ⟨10.1016/j.fsigen.2016.10.005⟩. ⟨hal-01588958⟩

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Débora Toledo Ramos, Helen Simone Chiaranda Lazzarin, Pedro J.J. Alvarez, Timothy M. Vogel, Marilda Fernandes, et al.. Biodiesel presence in the source zone hinders aromatic hydrocarbons attenuation in a B20-contaminated groundwater. Journal of Contaminant Hydrology, 2016, 193, pp.48 - 53. ⟨10.1016/j.jconhyd.2016.09.002⟩. ⟨hal-01588990⟩

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Thibaut Masy, Sandrine Demanèche, Olivier Tromme, Philippe Thonart, Philippe Jacques, et al.. Hydrocarbon biostimulation and bioaugmentation in organic carbon and clay-rich soils. Soil Biology and Biochemistry, 2016, 99, pp.66 - 74. ⟨10.1016/j.soilbio.2016.04.016⟩. ⟨hal-01589025⟩

ref_biblio

Qiongli Bao, Yizong Huang, Fenghua Wang, Sanan Nie, Graeme W. Nicol, et al.. Effect of nitrogen fertilizer and/or rice straw amendment on methanogenic archaeal communities and methane production from a rice paddy soil. Applied Microbiology and Biotechnology, 2016, 100 (13), pp.5989 - 5998. ⟨10.1007/s00253-016-7377-z⟩. ⟨hal-01589066⟩

ref_biblio

Laura E. Lehtovirta-Morley, Luis A. Sayavedra-Soto, Nicolas Gallois, Stefan Schouten, Lisa Y. Stein, et al.. Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”. Applied and Environmental Microbiology, 2016, 82 (9), pp.2608 - 2619. ⟨10.1128/AEM.04031-15⟩. ⟨hal-03906404⟩

ref_biblio

Eduard Vico Oton, Christopher Quince, Graeme W Nicol, James I Prosser, Cécile Gubry-Rangin. Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota. The International Society of Microbiologial Ecology Journal, 2016, 10 (1), pp.85 - 96. ⟨10.1038/ismej.2015.101⟩. ⟨hal-01589185⟩

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Lisa Ufarté, Sophie Bozonnet, Elisabeth Laville, Davide Cecchini, Sandra Serin, et al.. Functional metagenomics: construction and high-throughput screening of fosmid libraries for discovery of novel carbohydrate-active enzymes. Microbial Environmental Genomics MEG, 1399 (1ère ed.), Springer, 321 p., 2016, Methods in Molecular Biology, 978-1-4939-3367-9. ⟨10.1007/978-1-4939-3369-3_15⟩. ⟨hal-01266523⟩

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Jérémy Pivetal, Marie Frénéa-Robin, Naoufel Haddour, C. Vézy, L.-F. Zanini, et al.. Development and applications of a DNA labeling method with magnetic nanoparticles to study the role of horizontal gene transfer events between bacteria in soil pollutant bioremediation processes. Environmental Science and Pollution Research, 2015, 22 (24), pp.20322-20327. ⟨10.1007/s11356-015-5614-0⟩. ⟨hal-01389933⟩

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Bertrand Reuillard, Caroline Abreu, Noémie Lalaoui, Alan Le Goff, Michael Holzinger, et al.. One-year stability for a glucose/oxygen biofuel cell combined with pH reactivation of the laccase/carbon nanotube biocathode. Bioelectrochemistry, 2015, 106, pp.73 - 76. ⟨10.1016/j.bioelechem.2015.04.009⟩. ⟨hal-01388118⟩

ref_biblio

Elisabeth Navarro, Olivier Fabrègue, Riccardo Scorretti, Jérémy Reboulet, Pascal Simonet, et al.. RisaAligner software for aligning fluorescence data between Agilent 2100 Bioanalyzer chips: Application to soil microbial community analysis. Biotechniques, 2015, 59 (6), pp.347-358. ⟨10.2144/000114363⟩. ⟨hal-01245371⟩

ref_biblio

Chengsheng Zhu, Tom O. Delmont, Timothy M. Vogel, Yana Bromberg. Functional Basis of Microorganism Classification. PLoS Computational Biology, 2015, 11 (8), ⟨10.1371/journal.pcbi.1004472⟩. ⟨hal-01589154⟩

ref_biblio

Tom O. Delmont, A. Murat Eren, Lorrie Maccario, Emmanuel Prestat, Özcan C. Esen, et al.. Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics. Frontiers in Microbiology, 2015, 6, ⟨10.3389/fmicb.2015.00358⟩. ⟨hal-01589179⟩

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Jérémy Pivetal, David Royet, Georgeta Ciuta, Marie Frénéa-Robin, Naoufel Haddour, et al.. Micro-magnet arrays for specific single bacterial cell positioning. Journal of Magnetism and Magnetic Materials, 2015, 380, pp.72-77. ⟨10.1016/j.jmmm.2014.09.068⟩. ⟨hal-01113985⟩

ref_biblio

Laura Sanguino Casado, Laure Franqueville, Timothy M. Vogel, Catherine Larose. Linking environmental prokaryotic viruses and their host through CRISPRs. FEMS Microbiology Ecology, 2015, 91 (5), ⟨10.1093/femsec/fiv046⟩. ⟨hal-01589168⟩

ref_biblio

Jérémy Pivetal, Georgeta Ciuta, Marie Frénéa-Robin, Naoufel Haddour, Nora M. Dempsey, et al.. Magnetic nanoparticle DNA labeling for individual bacterial cell detection and recovery. Journal of Microbiological Methods, 2014, 107, pp.84-91. ⟨10.1016/j.mimet.2014.09.006⟩. ⟨hal-01113982⟩

ref_biblio

Yoann Le Digabel, Sandrine Demanèche, Yves Benoit, Françoise Fayolle-Guichard, Timothy M. Vogel. Ethyl tert-butyl ether (ETBE)-degrading microbial communities in enrichments from polluted environments. Journal of Hazardous Materials, 2014, 279, pp.502-510. ⟨10.1016/j.jhazmat.2014.07.013⟩. ⟨hal-01075205⟩

ref_biblio

Joseph Nesme, Sébastien Cecillon, Tom Delmont, Jean-Michel Monier, Timothy M. Vogel, et al.. Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment. Current Biology - CB, 2014, pp.voir DOI. ⟨10.1016/j.cub.2014.03.036⟩. ⟨hal-00988678⟩

ref_biblio

Samuel Jacquiod, Sandrine Demanèche, Laure Franqueville, Luka Ausec, Zhuofei Xu, et al.. Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library. Journal of Biotechnology, 2014, epub ahead of print. ⟨10.1016/j.jbiotec.2014.03.036⟩. ⟨hal-00989480⟩

ref_biblio

Fabrice Martin-Laurent, Chloé Merlin, Stéphane Vuilleumier, G. Imfeld, Timothy M Vogel, et al.. Biodechlord search for evidence for microbial degradation of chlordecone in French West Indies contaminated soils. Intersol'2014, Mar 2014, Lille, France. 1p. ⟨hal-01192455⟩

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Jérémy Pivetal, Sylvain Toru, Marie Frénéa-Robin, Naoufel Haddour, Sébastien Cecillon, et al.. Selective isolation of bacterial cells within a microfluidic device using magnetic probe-based cell fishing. Sensors and Actuators B: Chemical, 2014, 195, pp.581-589. ⟨10.1016/j.snb.2014.01.004⟩. ⟨hal-00946208⟩

ref_biblio

Alban Mathieu, Timothy M. Vogel, Pascal Simonet. The future of skin metagenomics. Research in Microbiology, 2013, 165 (2), pp.69-76. ⟨10.1016/j.resmic.2013.12.002⟩. ⟨hal-00925305⟩

ref_biblio

Pascal Simonet. Combination of conceptual and technical approaches for exploiting soil microbial resources. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925327⟩

ref_biblio

Sandrine Demanèche, Alban Mathieu, Pascal Simonet. Gene transfer from genetically modified plants to micro-organisms. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925333⟩

ref_biblio

Timothy M. Vogel. Emerging issues - An opinion. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925329⟩

ref_biblio

Joseph Nesme. Amazonian resistome: Evaluating antibiotic resistance abundance through metagenomic approaches. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925331⟩

ref_biblio

Sébastien Cecillon, Timothy M. Vogel. Soil microbial community structure vs. function - Who's driving?. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925336⟩

ref_biblio

Lorrie Maccario, Catherine Larose, Timothy M. Vogel. The Arctic snowpack microbial community highlighted by metagenomics and metatranscriptomics. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925332⟩

ref_biblio

Jean-Sébastien Beaulne. Spatial analysis of bacterial communities in soil: the effect of distance and enviromental pertubartion. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925330⟩

ref_biblio

Claudia I. de La Cruz-Perera, Soren J. Sorensen, Timothy M. Vogel, Sandrine Demanèche. Quantification of plasmids in soils stressed by different conditions. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925335⟩

ref_biblio

Timothy M. Vogel. Etat des lieux des outils et des technologies de biologie moléculaire. BiomInnov : La biologie moléculaire appliquée à l'Environnement et au service de l'innovation industrielle, Dec 2013, Romainville, France. ⟨hal-00925337⟩

ref_biblio

Sandrine Demanèche, M. Beuve, S. Vigneron, S. Djennane, E. Vigne, et al.. Assessing the impact of genetically modified plants on the environment using NGS; a case study on transgenic grapevine rootstocks expressing viral coat protein and bacterial nptII transgenes. BiomInnov : La biologie moléculaire appliquée à l'Environnement et au service de l'innovation industrielle, Dec 2013, Romainville, France. ⟨hal-00925339⟩

ref_biblio

Catherine Larose. Métagénomique bactérienne de la cryosphère. Interactions bactéries-champignons : un domaine de recherche fédérateur pour la microbiologie fondamentale et appliquée, Dec 2013, Roscoff, France. ⟨hal-00925341⟩

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Frédéric Dumas-Bouchiat, N.M Dempsey, D. Givord, L.F Zanini, A. Zaccaria, et al.. Micro-magnet developments for bio-medical applications, ex-vivo and in-vivo magnetic capture. MAGMA 2013, Dec 2013, Guwahati, India. ⟨hal-00944486⟩

ref_biblio

Yoann Le Digabel, Sandrine Demanèche, Yves Benoit, Timothy M. Vogel, Françoise Fayolle-Guichard. Ethyl tert-butyl ether (ETBE) biodegradation by a syntrophic association of Rhodococcus sp. IFP 2042 and Bradyrhizobium sp. IFP 2049 isolated from a polluted aquifer. Applied Microbiology and Biotechnology, 2013, 97 (24), pp.10531-10539. ⟨10.1007/s00253-013-4803-3⟩. ⟨hal-01075203⟩

ref_biblio

Catherine Larose, Emmanuel Prestat, Sébastien Cecillon, Sibel Berger, Cédric Malandain, et al.. Interactions between Snow Chemistry, Mercury Inputs and Microbial Population Dynamics in an Arctic Snowpack. PLoS ONE, 2013, 8 (11), pp.e79972. ⟨10.1371/journal.pone.0079972⟩. ⟨hal-00925290⟩

ref_biblio

Samuel Jacquiod, Laure Franqueville, Sébastien Cecillon, Timothy M. Vogel, Pascal Simonet. Soil Bacterial Community Shifts after Chitin Enrichment: An Integrative Metagenomic Approach. PLoS ONE, 2013, 8 (11), pp.e79699. ⟨10.1371/journal.pone.0079699⟩. ⟨hal-00920266⟩

ref_biblio

Saïd Jebors, Sébastien Cecillon, Clément Faye, Christine Enjalbal, Muriel Amblard, et al.. From protected trialkoxysilyl-peptide building blocks to bioorganic-silica hybrid materials. Journal of Materials Chemistry, 2013, pp.6510. ⟨10.1039/c3tb21326a⟩. ⟨hal-00921998⟩

ref_biblio

Pascal Simonet. Soil Metagenomics: Fundamental and Industrial Applications. 8th CeBiTec Symposium "The Genomics Revolution and its Impact on Future Biotechnology", Oct 2013, Bielefeld, Germany. ⟨hal-00925342⟩

ref_biblio

Sandrine Demanèche, Alban Mathieu, Pascal Simonet. Transferts de gènes de plantes génétiquement modifiées aux bactéries. VIème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Oct 2013, Parent, France. ⟨hal-00925343⟩

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Samuel Jacquiod, Sandrine Demanèche, Tom Delmont, Timothy M. Vogel, Pascal Simonet, et al.. Criblage génétique d'une banque fosmidique d'ADN métagénomique d'un sol de référence pour la recherche de gènes fonctionnels d'intérêt industriel. VIème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Oct 2013, Parent, France. ⟨hal-00925344⟩

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Laurine Blanchard, Sandrine Demanèche, François Buret, Timothy M. Vogel, C. E. Morris, et al.. Bactéries, foudre et transfert latéral dans les nuages. MicrobAERO : Microbiologie des Aérosols, Université Blaise Pascal (Clermont Ferrand 2) (UBP). FRA., Oct 2013, La Bourboule, France. ⟨hal-00932186⟩

ref_biblio

Jean-Sébastien Beaulne, Samir Mishra, Sébastien Cecillon, Vishakha Raina, Gurdeep Rastogi, et al.. Spatial diversity of sediment bacteria, an approach using GIS and 16S rRNA gene sequence profiling: The case of Chilika Lake. 5th Annual Argonne Soil Metagenomics Meeting, Oct 2013, Bloomingdale, Illinois, United States. ⟨hal-00932200⟩

ref_biblio

Pascal Simonet. Évolution de l'antibiorésistance dans le sol. 2013. ⟨hal-00925308⟩

ref_biblio

Joseph Nesme. Amazonian resistome: evaluating antibiotic resistance abundance and diversity across a French Guiana forest soil gradient through metagenomic approaches. 17th Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. ⟨hal-00932206⟩

ref_biblio

Laura Sanguino Casado, Timothy M. Vogel, Catherine Larose. Viruses keep Arctic microbial adaptation from its breaking point. PAM5, Sep 2013, Big Sky, Montana, United States. pp.23. ⟨hal-00932236⟩

ref_biblio

Catherine Larose, Sébastien Cecillon, Lorrie Maccario, Laura Sanguino Casado, Aurélien Dommergue, et al.. The Dynamic Arctic Snowpack Microbial Habitat. PAM5, Sep 2013, Big Sky, Montana, United States. pp.30. ⟨hal-00932225⟩

ref_biblio

Lorrie Maccario, Timothy M. Vogel, Catherine Larose. The Arctic snowpack microbial community highlighted by metagenomics and metatranscriptomics. PAM5, Sep 2013, Big Sky, Montana, United States. pp.36. ⟨hal-00932231⟩

ref_biblio

J. S. Bowman, Catherine Larose, Timothy M. Vogel, Jody W. Deming. Selective occurrence of Rhizobiales in frost flowers on the surface of young sea ice near Barrow, Alaska and distribution in the polar marine rare biosphere.. Environmental Microbiology Reports, 2013, 5 (4), pp.575-82. ⟨10.1111/1758-2229.12047⟩. ⟨hal-00925281⟩

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Tom Delmont, Pascal Simonet, Timothy M. Vogel. Mastering methodological pitfalls for surviving the metagenomic jungle.. BioEssays, 2013, 35 (8), pp.744-54. ⟨10.1002/bies.201200155⟩. ⟨hal-00846141⟩

ref_biblio

Pascal Simonet, Tom Delmont, Samuel Jacquiod, Laure Franqueville, Timothy M. Vogel. Managing microbial communities for finding new enzymes and sequentially reconstruct genomes from complex metagenomes. 5th Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Germany. pp.S32, SOIL METAGENOMICS, Hall 5. ⟨hal-00932256⟩

ref_biblio

Timothy M. Vogel. TerraGenome. Gordon Research Conference : Applied & Environmental Microbiology - Exploring and Exploiting the Depths of the Microbial Biosphere, Jul 2013, South Hadley, United States. ⟨hal-00988699⟩

ref_biblio

William H. Gaze, Stephen Krone, Joachim D.G. Larsson, Xian-Zhi Li, Joseph A. Robinson, et al.. Influence of Humans on Evolution and Mobilization of Environmental Antibiotic Resistome. Emerging Infectious Diseases, 2013, 19 (7), Online Report. ⟨10.3201/eid1907.120871⟩. ⟨hal-00925300⟩

ref_biblio

Laura Sanguino Casado, Natalia Forero Serna, Timothy M. Vogel, Catherine Larose. Use of CRISPRs in the search for a viral global metacommunity. CRISPR: Evolution, Mechanisms and Infection, Jun 2013, St Andrews, United Kingdom. ⟨hal-00988702⟩

ref_biblio

Alban Mathieu, Tom Delmont, Timothy M. Vogel, Patrick Robe, Renaud Nalin, et al.. Life on Human Surfaces: Skin Metagenomics. PLoS ONE, 2013, 8 (6), pp.e65288. ⟨10.1371/journal.pone.0065288⟩. ⟨hal-00846134⟩

ref_biblio

Catherine Larose, Lorrie Maccario, Laura Sanguino Casado, Aurélien Dommergue, Timothy M. Vogel. La neige : Un milieu vivant avec un rôle fondamental dans la régulation de la planète. 9èmes Journées Scientifiques du CNFRA, May 2013, Paris, France. ⟨hal-00988705⟩

ref_biblio

Emmanuel Prestat, Sérgio Rodrigues de Morais, Julie A Vendrell, Aurélie Thollet, Christian Gautier, et al.. Learning the local Bayesian network structure around the ZNF217 oncogene in breast tumours. Computers in Biology and Medicine, 2013, 43 (4), pp.334-341. ⟨10.1016/j.compbiomed.2012.12.002⟩. ⟨hal-00851231⟩

ref_biblio

Tom Delmont, Timothy M. Vogel, Pascal Simonet. Managing microbial communities for sequentially reconstruct genomes from complex metagenomes. EGU, Apr 2013, Vienne, Austria. pp.1147. ⟨hal-00821702⟩

ref_biblio

Catherine Larose, Aurélien Dommergue, Timothy M. Vogel. The Dynamic Arctic Snow Pack: An Unexplored Environment for Microbial Diversity and Activity. biology, 2013, 2 (1), pp.317-330. ⟨10.3390/biology2010317⟩. ⟨hal-00846152⟩

ref_biblio

Delina Y. Lyon, Timothy M. Vogel. Bioaugmentation for Groundwater Remediation: an Overview. Hans F. Stroo. Bioaugmentation for Groundwater Remediation, Springer New York, pp.1-37, 2013, SERDP ESTCP Environmental Remediation Technology, 978-1-4614-4114-4. ⟨10.1007/978-1-4614-4115-1_1⟩. ⟨hal-00846124⟩

ref_biblio

Catherine Larose, Aurélien Dommergue, Timothy M. Vogel. Microbial nitrogen cycling in Arctic snowpacks. Environmental Research Letters, 2013, 8 (3), pp.5004. ⟨10.1088/1748-9326/8/3/035004⟩. ⟨hal-00925293⟩

ref_biblio

Matthieu Moingt, Marc Lucotte, Jean-Sébastien Beaulne. The influence of anthropogenic disturbances and watershed morphological characteristics on Hg dynamics in Northern Quebec large boreal lakes. Advances in Environmental Research, 2013, 2 (2), pp.81-98. ⟨10.12989/aer.2013.2.2.081⟩. ⟨hal-00925304⟩

ref_biblio

Tom Delmont, Emmanuel Prestat, Kevin P. Keegan, Michael Faubladier, Patrick Robe, et al.. Structure, fluctuation and magnitude of a natural grassland soil metagenome.. The International Society of Microbiologial Ecology Journal, 2012, 6 (9), pp.1677-87. ⟨10.1038/ismej.2011.197⟩. ⟨hal-00747243⟩

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Eric Dugat-Bony, Corinne Biderre-Petit, Faouzi Jaziri, Maude M. David, Jérémie Denonfoux, et al.. In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes. Microbial Biotechnology, 2012, 5 (5 SI), pp.642-653. ⟨10.1111/j.1751-7915.2012.00339.x⟩. ⟨hal-00747255⟩

ref_biblio

Tom Delmont, Pascal Simonet, Timothy M. Vogel. Describing microbial communities and performing global comparisons in the 'omic era.. The International Society of Microbiologial Ecology Journal, 2012, 6 (9), pp.1625-8. ⟨10.1038/ismej.2012.55⟩. ⟨hal-00747239⟩

ref_biblio

Thomas A. Douglas, Lisa L. Loseto, Robie Macdonald, Peter Outridge, Aurélien Dommergue, et al.. The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review. Environmental Chemistry, 2012, 9 (4), pp.321-355. ⟨10.1071/EN11140⟩. ⟨hal-00846180⟩

ref_biblio

Ludovic Castro, A. Dommerguet, Catherine Larose, C. Ferrari, Laurent Maron. A Theoretical Study of Abiotic Methylation Reactions of Gaseous Elemental Mercury by Halogen-Containing Molecules. Journal of Physical Chemistry A, 2012, 115 (22), pp.5602-5608. ⟨10.1021/jp200643n⟩. ⟨insu-00646712⟩

ref_biblio

Katja Engel, Deborah Ashby, Sean F. Brady, Don A. Cowan, John Doemer, et al.. Meeting Report: 1st International Functional Metagenomics Workshop May 7–8, 2012, St. Jacobs, Ontario, Canada.. 1st International Functional Metagenomics Workshop, May 2012, St-Jacobs (Ontario), Canada. pp.106-111, ⟨10.4056/sigs.3406845⟩. ⟨hal-00989481⟩

ref_biblio

Xiaojun Zhang, Joseph Nesme, Pascal Simonet, Asa Frostegard. Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation. Research in Microbiology, 2012, 163 (3), pp.200-210. ⟨10.1016/j.resmic.2012.01.007⟩. ⟨hal-00747248⟩

ref_biblio

Pascal Simonet. Approches métagénomiques pour l'étude de la microflore du sol et implications dans le domaine de la santé. 24e Congrès Français de Rhumatologie, Dec 2011, Paris, France. pp.A29-A30, ⟨10.1016/S1169-8330(11)70042-4⟩. ⟨hal-00925252⟩

ref_biblio

Pascal Simonet. Approches métagénomiques pour l'étude de la microflore du sol.. 2011. ⟨hal-01079191⟩

ref_biblio

Tom Delmont, Cédric Malandain, Emmanuel Prestat, Catherine Larose, Jean-Michel Monier, et al.. Metagenomic mining for microbiologists. The International Society of Microbiologial Ecology Journal, 2011, 5 (12), pp.1837-1843. ⟨10.1038/ismej.2011.61⟩. ⟨hal-00747250⟩

ref_biblio

Nathalie Lombard, Samuel Jacquiod, J. Yuan, Aurélie Faugier, Céline Lavire, et al.. Genefish or how to capture targeted bacterial diversity. Conferences Jacques Monod : Integrative Ecological Genomics, Oct 2011, Roscoff, France. ⟨hal-00988629⟩

ref_biblio

Nathalie Lombard, Emmanuel Prestat, Jan Dirk van Elsas, Pascal Simonet. Soil-specific limitations for access and analysis of soil microbial communities by metagenomics. FEMS Microbiology Ecology, 2011, 78 (1), pp.31-49. ⟨10.1111/j.1574-6941.2011.01140.x⟩. ⟨hal-00630138⟩

ref_biblio

Sandrine Demanèche, Jean-Michel Monier, Eric Dugat-Bony, Pascal Simonet. Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria. FEMS Microbiology Ecology, 2011, 78 (1), pp.129-136. ⟨10.1111/j.1574-6941.2011.01126.x⟩. ⟨hal-00630134⟩

ref_biblio

Nicolas Marusczak, Catherine Larose, A. Dommergue, E. Yumvihoze, D. Lean, et al.. Total mercury and methylmercury in high altitude surface snow from the French Alps. Science of the Total Environment, 2011, 409 (19), pp.3949-3954. ⟨10.1016/j.scitotenv.2011.06.040⟩. ⟨insu-00647117⟩

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Tom Delmont, Patrick Robe, Ian M. Clark, Pascal Simonet, Timothy M Vogel. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods, 2011, 86 (3), pp.397-400. ⟨10.1016/j.mimet.2011.06.013⟩. ⟨hal-00629399⟩

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Nicolas Degrenne, François Buret, Bruno Allard, Jean-Michel Monier. Progress in Microbial Fuel Cells Energy Production. Advanced Materials Research, 2011, 324, pp.457-460. ⟨10.4028/www.scientific.net/AMR.324.457⟩. ⟨hal-00638261⟩

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Cynthia Ghobril, Delphine Felder-Flesch, Geneviève Pourroy, Sylvie Begin-Colin, Gabriela Popa, et al.. Synthesis of Dendritic Nano-objects Dedicated to Horizontal Gene Transfer Between Bacteria in Soil Pollutant Bio-attenuation Processes. 7th International Dendrimer Symposium, Jun 2011, Washington DC, United States. ⟨hal-00971461⟩

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Jean-Michel Monier, Sandrine Demanèche, Tom Delmont, Alban Mathieu, Timothy M Vogel, et al.. Metagenomic exploration of antibiotic resistance in soil. Current Opinion in Microbiology, 2011, 14 (3), pp.229-235. ⟨10.1016/j.mib.2011.04.010⟩. ⟨hal-00629407⟩

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Nicolas Degrenne, François Buret, Bruno Allard, Jean-Michel Monier. Progress in Microbial Fuel Cells Energy Production. CIMA, Mar 2011, Beyrouth, Lebanon. pp.S8-5. ⟨hal-00787187⟩

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Tom Delmont, Patrick Robe, Sébastien Cecillon, Ian M. Clark, Florentin Constancias, et al.. Accessing the Soil Metagenome for Studies of Microbial Diversity. Applied and Environmental Microbiology, 2011, 77 (4), pp.1315-1324. ⟨10.1128/AEM.01526-10⟩. ⟨hal-00579312⟩

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Jack Gilbert, Ronald O'Dor, Timothy M. Vogel. Survey data are still vital to science. Nature, 2011, 469 (7329), pp.162. ⟨10.1038/469162a⟩. ⟨hal-00579327⟩

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Lionel Ranjard, Samuel Dequiedt, Claudy Jolivet, Nicolas Saby, Jean Thioulouse, et al.. Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative. Eric Lichtfouse; Marjolaine Hamelin; Mireille Navarrete; Philippe Debaeke. Sustainable Agriculture Volume 2, Springer, pp.857-865, 2011, 978-94-007-0393-3. ⟨10.1007/978-94-007-0394-0_37⟩. ⟨hal-00860770⟩

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Tom Delmont, Laure Franqueville, Samuel Jacquiod, Pascal Simonet, Timothy M. Vogel. Soil Metagenomic Exploration of the Rare Biosphere. Frans J. de Bruijn. Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches, Wiley-Blackwell, pp.287-298, 2011, 978-0-470-92418-1. ⟨hal-00925266⟩

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Sandrine Demanèche, Camille Brard, Oscar Lima, Françoise Binet, Pascal Simonet. Development of a new tool to improve gene transfer frequency calculations. Journal of Microbiological Methods, 2011, 86 (2), pp.255-257. ⟨10.1016/j.mimet.2011.05.014⟩. ⟨hal-00627100⟩

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Imes Petric, Laurent Philippot, Cristina Abbate, Antonio Bispo, Thierry Chesnot, et al.. Inter-laboratory evaluation of the ISO standard 11063 "soil quality - method to directly extract DNA from soil samples". Journal of Microbiological Methods, 2011, 84 (3), pp.454-460. ⟨10.1016/j.mimet.2011.01.016⟩. ⟨ineris-00963282⟩

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Pascal Simonet, Christophe Plomion, Francis Martin. Quand la génomique rencontre l'écologie. 2011, pp.26-29. ⟨hal-00925278⟩

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Jérémy Pivetal, Osman Osman, Cyrille Vézy, Marie Frénéa-Robin, Frédéric Dumas-Bouchiat, et al.. Trapping of Magnetically‐Labelled Liposomes on Flat Micro‐Patterned Hard Magnetic Films. AIP Conference Proceedings, 2010, 1311 (1), pp.192-197. ⟨10.1063/1.3530011⟩. ⟨hal-00734066⟩

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Marina Hery, Hervé Sanguin, Sergio Perez Fabiel, Xavier Lefebvre, Timothy M. Vogel. Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining DNA phylochip and respirometry techniques. Water Research, 2010, 44 (20), pp.6133-6143. ⟨10.1016/j.watres.2010.07.003⟩. ⟨hal-00579323⟩

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Catherine Larose, A. Domergue, Martine de Angelis, Daniel Cossa, Bernard Averty, et al.. Springtime changes in snow chemistry lead to new insights into mercury methylation in the Arctic. Geochimica et Cosmochimica Acta, 2010, 74 (22), pp.6263-6275. ⟨10.1016/j.gca.2010.08.043⟩. ⟨insu-00562243⟩

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Mathieu Brun, Anne-Laure Deman, Jean-François Chateaux, Marie Frénéa-Robin, Naoufel Haddour, et al.. Nanocomposite Carbon-PDMS thick electrodes for electrokinetic manipulation during cell fusion. MicroTAS, Oct 2010, Groningen, Netherlands. pp.911-913. ⟨hal-00734010⟩

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Osman Osman, Cyrille Vézy, Jérémy Pivetal, Marie Frénéa-Robin, Naoufel Haddour, et al.. A novel device for continuous flow magnetic trapping and sorting of human cells using flat micro-patterned NdFeB films. MicroTAS, Oct 2010, Groningen, Netherlands. pp.515-517. ⟨hal-00734020⟩

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Nicolas Degrenne, Bruno Allard, François Buret, Jean-Michel Monier. Récupération de l'énergie électrique produite par les piles à combustibles microbiennes. 13ème EPF, Jun 2010, Saint-Nazaire, France. ⟨hal-00578528⟩

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Catherine Larose, Aurélien Dommergue, Martine de Angelis, Daniel Cossa, Bernard Averty, et al.. Assessing interactions between snow chemistry and microbial populations in the snowpack: a metagenomic approach. International Polar Year Oslo Conference 2010, Norway: 'Polar Science - Global Impact', Jun 2010, Oslo, Norway. ⟨hal-00925321⟩

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Catherine Larose, Sébastien Cecillon, Emmanuel Prestat, Sibel Berger, Delina Y. Lyon, et al.. Seasonal changes in snow chemistry lead to new insights into mercury methylation in the Arctic. International Polar Year Oslo Conference 2010, Norway: 'Polar Science - Global Impact', Jun 2010, Oslo, Norway. ⟨hal-00925324⟩

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Alessandra Pontiroli, Maria Teresa Ceccherini, John Poté, Walter Wildi, Elizabeth Kay, et al.. Long-term persistence and bacterial transformation potential of transplastomic plant DNA in soil. Research in Microbiology, 2010, 161 (5), pp.326-334. ⟨10.1016/j.resmic.2010.04.009⟩. ⟨hal-00539229⟩

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Delina Y. Lyon, Jérémy Pivetal, Laurine Blanchard, Timothy M. Vogel. Bioremediation via In Situ Electrotransformation. Bioremediation Journal, 2010, 14 (2), pp.109-119. ⟨10.1080/10889861003767092⟩. ⟨hal-00925250⟩

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Cédric Malandain, Françoise Fayolle-Guichard, Timothy M. Vogel. Cytochromes P450-mediated degradation of fuel oxygenates by environmental isolates. FEMS Microbiology Ecology, 2010, 72 (2), pp.289-296. ⟨10.1111/j.1574-6941.2010.00847.x⟩. ⟨hal-00476162⟩

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Delina Y. Lyon, François Buret, Timothy M. Vogel, Jean-Michel Monier. Is resistance futile? Changing external resistance does not improve microbial fuel cell performance. Biochemistry, 2010, 78 (1), pp.2-7. ⟨10.1016/j.bioelechem.2009.09.001⟩. ⟨hal-00417880⟩

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Delina Y. Lyon, Jean-Michel Monier, Sébastien Dupraz, Caroline Freissinet, Pascal Simonet, et al.. Integrity and Biological Activity of DNA after UV Exposure. Astrobiology, 2010, 10 (3), pp.285-292. ⟨10.1089/ast.2009.0359⟩. ⟨hal-00539533⟩

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Pascal Simonet. Terragénome : un consortium international pour séquencer le métagénome du sol. La métagénomique et ses conséquences - Séance commune Académie des sciences / Académie d'agriculture de France, Mar 2010, Paris, France. ⟨hal-00476092⟩

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Amy R. Sapkota, Sibel Berger, Timothy M. Vogel. Human Pathogens Abundant in the Bacterial Metagenome of Cigarettes. Environmental Health Perspectives, 2010, 118 (3), pp.351-356. ⟨10.1289/ehp.0901201⟩. ⟨hal-00476194⟩

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Catherine Larose, Sibel Berger, Christophe P. Ferrari, Elisabeth Navarro, Aurélien Dommergue, et al.. Microbial sequences retrieved from environmental samples from seasonal Arctic snow and meltwater from Svalbard, Norway. Extremophiles, 2010, 14 (2), pp.205-212. ⟨10.1007/s00792-009-0299-2⟩. ⟨hal-00476166⟩

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Pascal Simonet. Terragenome, an international consortium for the sequencing of a reference soil metagenome. The Soil Metagenome: Prospects on basic and applied research A workshop to promote the Italian Soil Metagenomic Project, Jan 2010, Florence, Italy. ⟨hal-00446139⟩

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John Poté, Maria Teresa Ceccherini, Walter Rosselli, Walter Wildi, Pascal Simonet, et al.. Leaching and transformability of transgenic DNA in unsaturated soil columns. Ecotoxicology and Environmental Safety, 2010, 73 (1), pp.67-72. ⟨10.1016/j.ecoenv.2009.09.009⟩. ⟨hal-00476159⟩

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Audra Nemir, Maude M. David, Ronan Perrussel, Amy R. Sapkota, Pascal Simonet, et al.. Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils. Chemosphere, 2010, 80 (5), pp.600-607. ⟨10.1016/j.chemosphere.2010.03.036⟩. ⟨hal-00515484⟩

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Pascal Simonet. An international public consortium for the complete sequencing of a reference soil metagenome (TERRAGENOME). Mikrobiokosmos 2, Dec 2009, Athènes, Greece. ⟨hal-00443908⟩

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Elisabeth Navarro, Riccardo Scorretti, Timothy M Vogel, Pascal Simonet. Apport du séquençage massif à l'étude de la diversité et du fonctionnement des communautés bactériennes. ÉVOLUTION ET BIODIVERSITÉ MICROBIENNE IMPACT DU SÉQUENÇAGE DE NOUVELLE GÉNÉRATION, Dec 2009, Paris, France. ⟨hal-00440051⟩

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Pascal Simonet. Using a metagenomics approach to identify and characterize novel degradation genes in soil. Microbial Degradation of Soil Pollutants - Processes and Impact - CREAM and RECETO Symposium, Nov 2009, Copenhagen, Denmark. ⟨hal-00438160⟩

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Ana-Maria Florescu, Marc Joyeux, Bénédicte Lafay. Modeling of 2-D DNA display.. Electrophoresis, 2009, 30 (21), pp.3649-56. ⟨10.1002/elps.200900258⟩. ⟨hal-00431057⟩

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Pascal Simonet. An international public consortium for the complete sequencing of a reference soil metagenome (TERRAGENOME). Séminaires de l'AIP BioRessources, Oct 2009, Toulouse, France. ⟨hal-00438217⟩

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Pascal Simonet. Etude de l'impact des plantes transgéniques sur les bactéries de la rhizosphère et du transfert du transgène vers ces bactéries.. 10ème Forum des Biotechnologies, Oct 2009, Marseille Luminy, France. ⟨hal-00438222⟩

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Pascal Simonet. TerraGenome: An International Public Consortium for the Complete Sequencing of a Reference Soil Metagenome. MARCO Symposium 2009, Oct 2009, Tsukuba, Japan. pp.42-45. ⟨hal-00423888⟩

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Timothy M Vogel, Penny R. Hirsch, Pascal Simonet, Janet K. Jansson, James M. Tiedje, et al.. Advantages of the metagenomic approach for soil exploration: reply from Vogel et al.. Nature Reviews Microbiology, 2009, 7 (10), pp.756 - 757. ⟨10.1038/nrmicro2119-c3⟩. ⟨hal-00418305⟩

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Sandrine Demanèche, John Poté, Hervé Sanguin, Dominique Bernillon, Patrick Mavingui, et al.. Maîtrise de la dispersion des gènes de résistance aux antibiotiques en milieux naturels (AntiReSol). Congrès AFEM, Aug 2009, Ecully, France. ⟨hal-00411821⟩

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Sandrine Demanèche, Laurent Philippot, Maude M. David, Elisabeth Navarro, Timothy M Vogel, et al.. Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. FEMS 2009 – Third Congress of European Microbiologists : Microbes and Man – Interdependence and Future Challenges, Jun 2009, Goteborg, Sweden. ⟨hal-00411820⟩

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Sibel Berger, Sébastien Cecillon, Cécile Thion, Maude M. David, Timothy M Vogel. GENOME FLEXIBILITY ACROSS DIFFERENT STRAINS OF THE HEXACHLOROCYCLANE-DEGRADING BACTERIUM SPHINGOBIUM FRANCENSE SP+ IDENTIFIED BY A GLOBAL APPROACH OF GENOME SEQUENCING AND MICROARRAY COMPARATIVE GENOMIC HYBRIDIZATION. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399182⟩

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Maude M. David, Elisabeth Navarro, Janet K. Jansson, Timothy M Vogel. COMPARISON BETWEEN TOTAL AND ACTIVE BACTERIAL COMMUNITIES IN SOIL CONTAMINATED BY CHLORINATED COMPOUNDS, USING PYROSEQUENCING AND MICROARRAYS. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399231⟩

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Maude M. David, Sébastien Cecillon, Elisabeth Navarro, Timothy M Vogel. ASSESSING DEHALOGENASE ACTIVITIES UTILIZING INTEGRATING QUANTITATIVE PCR AND MICROARRAYS DURING PCE BIOREMEDIATION : THE CONTRUCTION OF A NEW DEGRADATION MODEL. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399232⟩

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Sébastien Cecillon, Elisabeth Navarro, Riccardo Scorretti, Jean-Michel Monier, Aurélie Faugier, et al.. COMPARATIVE ANALYSIS OF MICROARRAY, RISA AND SEQUENCING APPROACHES FOR MICROBIAL COMMUNITY ANALYSES. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399230⟩

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Delina Y. Lyon, Adrien Vigneron, François Buret, Timothy M Vogel, Jean-Michel Monier. STRUCTURE AND PERFORMANCE OF ELECTRO-ACTIVE BACTERIAL COMMUNITIES IN MICROBIAL FUEL CELLS UNDER VARYING OPERATING CONDITIONS. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399263⟩

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Sandrine Demanèche, Laurent L. Philippot, Maude M David, Elisabeth Navarro, Timothy Vogel, et al.. Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. 10. Symposium on Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-02753844⟩

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Delina Y. Lyon, Jérémy Pivetal, Pascal Simonet, Timothy M Vogel. LIGHTNING-ASSISTED ENVIRONMENTAL GENETIC THERAPY. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399257⟩

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Camille Brard, Saliou Fall, Oscar Lima, Françoise Binet, Pascal Simonet. Development of a Molecular signature tagged recipient bacterial strain to improve determination of Horizontal Gene Transfer Frequency in the environment.. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00562080⟩

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Catherine Larose, Sibel Berger, Christophe P. Ferrari, Elisabeth Navarro, Aurélien Dommergue, et al.. ASSESSING INTERACTIONS BETWEEN MERCURY AND MICROBIAL POPULATIONS IN THE SNOWPACK: A METAGENOMIC APPROACH. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399256⟩

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Jean-Michel Monier, Delina Y. Lyon, Sébastien Cecillon, François Buret, Timothy M Vogel. FROM “OMICS” TO “OHMICS”: ELECTRICITYPRODUCING BACTERIAL COMMUNITY STRUCTURES IN MICROBIAL FUEL CELLS. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399261⟩

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Camille Brard, Saliou Fall, Oscar Lima, Françoise Binet, Pascal Simonet. DEVELOPMENT AND USE OF A MOLECULAR SIGNATURE TAGGED RECIPIENT BACTERIAL STRAIN TO IMPROVE DETERMINATION OF HORIZONTAL GENE TRANSFER FREQUENCY IN THE ENVIRONMENT. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399187⟩

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Nathalie Lombard, Aurélie Faugier, Céline Lavire, Laure Franqueville, Samuel Jacquiod, et al.. GENEFISHING: AN ALTERNATE METAGENOMIC APPROACH FOR CAPTURING TARGETED BACTERIAL DIVERSITY IN AN ENGINEERED RECIPIENT E. COLI STRAIN. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399252⟩

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Aurélie Faugier, Saliou Fall, Timothy M Vogel, Pascal Simonet. IS EVERYTHING EVERYWHERE?. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399250⟩

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Elisabeth Navarro, Riccardo Scorretti, Pascal Simonet, Timothy M Vogel. MICROBIAL CANNIBALISM IN EXTREME STARVED ENVIRONMENT. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399177⟩

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Tom Delmont, Florentin Constancias, Sébastien Cecillon, Elisabeth Navarro, Pascal Simonet, et al.. SOIL METAGENOMIC: WHERE IS THE DIVERSITY?. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399234⟩

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Maude M. David, Sibel Berger, Margaux Mesle, Pascal Simonet, Timothy M Vogel. WHERE DO DEHALOGENASES COME FROM ? A MULTIDISCIPLINARY STUDY HIGHLIGHTS THE PRIMARY ROLE OF HORIZONTAL GENE TRANSFER DURING RECENT FUNCTIONAL ADAPTATION. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399233⟩

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Cédric Malandain, Françoise Fayolle-Guichard, Timothy M Vogel. DISTRIBUTION AND REGULATION OF CYTOCHROMES P450 INVOLVED IN FUEL OXYGENATES DEGRADATION. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399251⟩

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Cédric Malandain, Jean-Paul Ambrosi, Elodie Vicini, Sébastien Cecillon, Timothy M Vogel, et al.. GEOMICROBIOLOGY OF EXTREME SOILS. BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399260⟩

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Pascal Simonet, Elisabeth Navarro, Timothy M Vogel. COMPLETE SEQUENCING OF THE SOIL METAGENOME: AN ATTAINABLE UTOPIA?. BAGECO 10 : Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-00399175⟩

ref_biblio

Alessandra Pontiroli, Aurora Rizzi, Pascal Simonet, Daniele Daffonchio, Timothy M. Vogel, et al.. Visual Evidence of Horizontal Gene Transfer between Plants and Bacteria in the Phytosphere of Transplastomic Tobacco. Applied and Environmental Microbiology, 2009, 75 (10), pp.3314-3322. ⟨10.1128/AEM.02632-08⟩. ⟨hal-00391652⟩

ref_biblio

Timothy M Vogel, Pascal Simonet, Janet K. Jansson, Penny R. Hirsch, James M. Tiedje, et al.. TerraGenome: a consortium for the sequencing of a soil metagenome. Nature Reviews Microbiology, 2009, 7 (4), pp.252. ⟨10.1038/nrmicro2119⟩. ⟨hal-00391653⟩

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John Poté, Patrick Mavingui, Elisabeth Navarro, Walter Rosselli, Walter Wildi, et al.. Extracellular plant DNA in Geneva groundwater and traditional artesian drinking water fountains. Chemosphere, 2009, 75 (4), pp.498-504. ⟨10.1016/j.chemosphere.2008.12.048⟩. ⟨hal-00368906⟩

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Jan Sørensen, Mette Haubjerg Nicolaisen, Eliora Ron, Pascal Simonet. Molecular tools in rhizosphere microbiology—from single-cell to whole-community. Plant and Soil, 2009, 321 (1-2), pp.483-512. ⟨10.1007/s11104-009-9946-8⟩. ⟨hal-00411800⟩

ref_biblio

Pascal Simonet. Intérêt et limite de l'approche métagénomique appliquée à la microflore du sol / The metagenomic approach applied to soil microflora, interest and limits. XVIIème eurofins international seminar, Feb 2009, Paris, France. ⟨hal-00411822⟩

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Sandrine Demanèche, Laurent Philippot, Maude M. David, Elisabeth Navarro, Timothy M Vogel, et al.. Characterization of Denitrification Gene Clusters of Soil Bacteria via a Metagenomic Approach. Applied and Environmental Microbiology, 2009, 75 (2), pp.534-537. ⟨10.1128/aem.01706-08⟩. ⟨hal-00368298⟩

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Sandrine Demanèche, Maude M. David, Elisabeth Navarro, Pascal Simonet, Timothy M Vogel. Evaluation of functional gene enrichment in a soil metagenomic clone library. Journal of Microbiological Methods, 2009, 76 (1), pp.105-107. ⟨10.1016/j.mimet.2008.09.009⟩. ⟨hal-00368291⟩

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Florian Liegeois, Bénédicte Lafay, Pierre Formenty, Sabrina Locatelli, Valérie Courgnaud, et al.. Full-Length Genome Characterization of a Novel Simian Immunodeficiency Virus Lineage (SIVolc) from Olive Colobus (Procolobus verus) and New SIVwrcPbb Strains from Western Red Colobus (Piliocolobus badius badius) from the Taï Forest in Ivory Coast. Journal of Virology, 2009, 83 (1), pp.428-439. ⟨10.1128/JVI.01725-08⟩. ⟨hal-00399031⟩

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Anne Mercier, Franck Bertolla, Eugénie Robe, Pascal Simonet. Influence of DNA conformation and role of comA and recA on natural transformation in Ralstonia solanacearum. Canadian Journal of Microbiology, 2009, 55 (6), pp.762-770. ⟨10.1139/W09-025⟩. ⟨halsde-00526095⟩