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Rayane Mouh Mameri, Jacques Bodennec, Laurent Bezin, Sandrine Demanèche. Mitigation of Expression of Virulence Genes in Legionella pneumophila Internalized in the Free-Living Amoeba Willaertia magna C2c Maky. Pathogens, 2020, 9 (6), pp.447. ⟨10.3390/pathogens9060447⟩. ⟨hal-03104389⟩

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Issam Hasni, Antoine Jarry, Benjamin Quelard, Antoine Carlino, Jean-Baptiste Eberst, et al.. Intracellular Behaviour of Three Legionella pneumophila Strains within Three Amoeba Strains, Including Willaertia magna C2c Maky. Pathogens, 2020, 9 (2), pp.105. ⟨10.3390/pathogens9020105⟩. ⟨hal-02529333⟩

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Issam Hasni, Nicholas Armstrong, Philippe Decloquement, Said Azza, Anthony Fontanini, et al.. Proteomics and Lipidomics Investigations to Decipher the Behavior of Willaertia magna C2c Maky According to Different Culture Modes. Microorganisms, 2020, 8 (11), ⟨10.3390/microorganisms8111791⟩. ⟨hal-03149267⟩

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Issam Hasni, Philippe Decloquement, Sandrine Demaneche, Rayane Mouh Mameri, Olivier Abbe, et al.. Insight into the Lifestyle of Amoeba Willaertia magna during Bioreactor Growth Using Transcriptomics and Proteomics. Microorganisms, 2020, 8 (5), ⟨10.3390/microorganisms8050771⟩. ⟨hal-03149979⟩

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Nogaye Niang, Sandrine Demanèche, Ibrahima Ndoye, Elisabeth Navarro, Saliou Fall. Genetic diversity of rhizobia and plant growth promoting rhizobacteria of soil under the influence of Piliostigma reticulatum (DC.) Hochst and their impact on shrub growth. African Journal of Agricultural Research, 2018, ⟨10.5897/AJAR2018.13494⟩. ⟨ird-02497476⟩

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Tue Kjærgaard Nielsen, Morten Grud Rasmussen, Sandrine Demanèche, Sébastien Cecillon, Timothy M. Vogel, et al.. Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH. Genome Biology and Evolution, 2017, 9 (9), pp.2477-2490. ⟨10.1093/gbe/evx185⟩. ⟨hal-01970342⟩

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Jean-Michel Hily, Sandrine Demanèche, Nils Poulicard, Mélanie Tannières, Samia Djennane, et al.. Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal, 2017, 16 (1), pp.208-220. ⟨10.1111/pbi.12761⟩. ⟨hal-01588179⟩

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Jean-Michel Hily, Sandrine Demanèche, Nils Poulicard, Samia Djennane, Emmanuelle Vigne, et al.. No undesired impact of GM grapevines cultivation on viruses and its associated soil bacteria. 16. Rencontres de Virologie Végétale (RVV 2017), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD). FRA., Jan 2017, Aussois, France. ⟨hal-01607521⟩

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Habteab Habtom, Sandrine Demanèche, Lorna Dawson, Chen Azulay, Ofra Matan, et al.. Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies. Forensic Science International: Genetics , 2017, 26, pp.21 - 29. ⟨10.1016/j.fsigen.2016.10.005⟩. ⟨hal-01588958⟩

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Sandrine Demanèche, Leif Schauser, Lorna Dawson, Laure Franqueville, Pascal Simonet. Microbial soil community analyses for forensic science: Application to a blind test. Forensic Science International, 2017, 270, pp.153 - 158. ⟨10.1016/j.forsciint.2016.12.004⟩. ⟨hal-01588951⟩

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Laurine S Blanchard, Anaïs Monin, Hounaïda Ouertani, Lamia Touaibia, Elisa Michel, et al.. Survival and electrotransformation of Pseudomonas syringae strains under simulated cloud-like conditions.. FEMS Microbiology Ecology, 2017, 93 (5), pp.fix057. ⟨10.1093/femsec/fix057⟩. ⟨hal-01608828⟩

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Thibaut Masy, Sandrine Demanèche, Olivier Tromme, Philippe Thonart, Philippe Jacques, et al.. Hydrocarbon biostimulation and bioaugmentation in organic carbon and clay-rich soils. Soil Biology and Biochemistry, 2016, 99, pp.66 - 74. ⟨10.1016/j.soilbio.2016.04.016⟩. ⟨hal-01589025⟩

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Lisa Ufarté, Sophie Bozonnet, Elisabeth Laville, Davide Cecchini, Sandra Serin, et al.. Functional metagenomics: construction and high-throughput screening of fosmid libraries for discovery of novel carbohydrate-active enzymes. Microbial Environmental Genomics MEG, 1399 (1ère ed.), Springer, 321 p., 2016, Methods in Molecular Biology, 978-1-4939-3367-9. ⟨10.1007/978-1-4939-3369-3_15⟩. ⟨hal-01266523⟩

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Elisabeth Navarro, Olivier Fabrègue, Riccardo Scorretti, Jérémy Reboulet, Pascal Simonet, et al.. RisaAligner software for aligning fluorescence data between Agilent 2100 Bioanalyzer chips: Application to soil microbial community analysis. Biotechniques, 2015, 59 (6), pp.347-358. ⟨10.2144/000114363⟩. ⟨hal-01245371⟩

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Sandrine Demanèche, Pascal Simonet, L A Dawson. Microbial Soil Community Analyses for Forensic Science: Application to a Blind Test. Ecology of soil Microorganisms, Nov 2015, Prague, Czech Republic. ⟨hal-01976808⟩

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Sandrine Demanèche, Samia Djennane, Monique Beuve, Pascal Simonet, Didier Merdinoglu. Assessing the impact of transgenic grapevine rootstocks on the environment using NGS. FEMS congress: 6th congress of European Microbiologists, Jun 2015, Maastricht, Netherlands. ⟨hal-01974620⟩

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Yoann Le Digabel, Sandrine Demanèche, Yves Benoit, Françoise Fayolle-Guichard, Timothy M. Vogel. Ethyl tert-butyl ether (ETBE)-degrading microbial communities in enrichments from polluted environments. Journal of Hazardous Materials, 2014, 279, pp.502-510. ⟨10.1016/j.jhazmat.2014.07.013⟩. ⟨hal-01075205⟩

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Samuel Jacquiod, Sandrine Demanèche, Laure Franqueville, Luka Ausec, Zhuofei Xu, et al.. Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library. Journal of Biotechnology, 2014, epub ahead of print. ⟨10.1016/j.jbiotec.2014.03.036⟩. ⟨hal-00989480⟩

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Claudia I. de La Cruz-Perera, Soren J. Sorensen, Timothy M. Vogel, Sandrine Demanèche. Quantification of plasmids in soils stressed by different conditions. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925335⟩

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Sandrine Demanèche, Alban Mathieu, Pascal Simonet. Gene transfer from genetically modified plants to micro-organisms. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925333⟩

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Sandrine Demanèche, M. Beuve, S. Vigneron, S. Djennane, E. Vigne, et al.. Assessing the impact of genetically modified plants on the environment using NGS; a case study on transgenic grapevine rootstocks expressing viral coat protein and bacterial nptII transgenes. BiomInnov : La biologie moléculaire appliquée à l'Environnement et au service de l'innovation industrielle, Dec 2013, Romainville, France. ⟨hal-00925339⟩

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Yoann Le Digabel, Sandrine Demanèche, Yves Benoit, Timothy M. Vogel, Françoise Fayolle-Guichard. Ethyl tert-butyl ether (ETBE) biodegradation by a syntrophic association of Rhodococcus sp. IFP 2042 and Bradyrhizobium sp. IFP 2049 isolated from a polluted aquifer. Applied Microbiology and Biotechnology, 2013, 97 (24), pp.10531-10539. ⟨10.1007/s00253-013-4803-3⟩. ⟨hal-01075203⟩

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Sandrine Demanèche, Alban Mathieu, Pascal Simonet. Transferts de gènes de plantes génétiquement modifiées aux bactéries. VIème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Oct 2013, Parent, France. ⟨hal-00925343⟩

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Samuel Jacquiod, Sandrine Demanèche, Tom Delmont, Timothy M. Vogel, Pascal Simonet, et al.. Criblage génétique d'une banque fosmidique d'ADN métagénomique d'un sol de référence pour la recherche de gènes fonctionnels d'intérêt industriel. VIème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Oct 2013, Parent, France. ⟨hal-00925344⟩

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Laurine Blanchard, Sandrine Demanèche, François Buret, Timothy M. Vogel, C. E. Morris, et al.. Bactéries, foudre et transfert latéral dans les nuages. MicrobAERO : Microbiologie des Aérosols, Université Blaise Pascal (Clermont Ferrand 2) (UBP). FRA., Oct 2013, La Bourboule, France. ⟨hal-00932186⟩

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Sandrine Demanèche, Jean-Michel Monier, Eric Dugat-Bony, Pascal Simonet. Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria. FEMS Microbiology Ecology, 2011, 78 (1), pp.129-136. ⟨10.1111/j.1574-6941.2011.01126.x⟩. ⟨hal-00630134⟩

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Jean-Michel Monier, Sandrine Demanèche, Tom Delmont, Alban Mathieu, Timothy M Vogel, et al.. Metagenomic exploration of antibiotic resistance in soil. Current Opinion in Microbiology, 2011, 14 (3), pp.229-235. ⟨10.1016/j.mib.2011.04.010⟩. ⟨hal-00629407⟩

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Sandrine Demanèche, Camille Brard, Oscar Lima, Françoise Binet, Pascal Simonet. Development of a new tool to improve gene transfer frequency calculations. Journal of Microbiological Methods, 2011, 86 (2), pp.255-257. ⟨10.1016/j.mimet.2011.05.014⟩. ⟨hal-00627100⟩

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Sandrine Demanèche, John Poté, Hervé Sanguin, Dominique Bernillon, Patrick Mavingui, et al.. Maîtrise de la dispersion des gènes de résistance aux antibiotiques en milieux naturels (AntiReSol). Congrès AFEM, Aug 2009, Ecully, France. ⟨hal-00411821⟩

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Sandrine Demanèche, Laurent L. Philippot, Maude M David, Elisabeth Navarro, Timothy Vogel, et al.. Characterization of soil bacteria denitrification gene cluster via a metagenomic approach. 3. FEMS Congress of European Microbiologists :microbes and man-interdependence and future challenges, Jun 2009, Gothenburg, Sweden. 1 p. ⟨hal-02818354⟩

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Sandrine Demanèche, Laurent Philippot, Maude M. David, Elisabeth Navarro, Timothy M Vogel, et al.. Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. FEMS 2009 – Third Congress of European Microbiologists : Microbes and Man – Interdependence and Future Challenges, Jun 2009, Goteborg, Sweden. ⟨hal-00411820⟩

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Sandrine Demanèche, Laurent L. Philippot, Maude M David, Elisabeth Navarro, Timothy Vogel, et al.. Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. 10. Symposium on Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden. ⟨hal-02753844⟩

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Sandrine Demanèche, Laurent Philippot, Maude M. David, Elisabeth Navarro, Timothy M Vogel, et al.. Characterization of Denitrification Gene Clusters of Soil Bacteria via a Metagenomic Approach. Applied and Environmental Microbiology, 2009, 75 (2), pp.534-537. ⟨10.1128/aem.01706-08⟩. ⟨hal-00368298⟩

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Sandrine Demanèche, Maude M. David, Elisabeth Navarro, Pascal Simonet, Timothy M Vogel. Evaluation of functional gene enrichment in a soil metagenomic clone library. Journal of Microbiological Methods, 2009, 76 (1), pp.105-107. ⟨10.1016/j.mimet.2008.09.009⟩. ⟨hal-00368291⟩

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Sandrine Demanèche, Jean-Paul Chapel, Lucile Jocteur Monrozier, Herve Quiquampoix. Dissimilar pH-dependent adsorption features of bovine serum albumin and alpha-chymotrypsin on mica probed by AFM. Colloids and Surfaces B: Biointerfaces, 2009, 70 (2), pp.226-231. ⟨10.1016/j.colsurfb.2008.12.036⟩. ⟨hal-02668999⟩